miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5743 5' -56.3 NC_001806.1 + 151549 0.67 0.86021
Target:  5'- cCGGGCGgccGGggGCGGcgggggCCGCgaugGCGGCGg -3'
miRNA:   3'- uGCUCGU---CCuuCGCCa-----GGUG----CGUUGC- -5'
5743 5' -56.3 NC_001806.1 + 151439 0.71 0.615723
Target:  5'- cACcGGCGGGggGCGG-CgGCGgGGCGg -3'
miRNA:   3'- -UGcUCGUCCuuCGCCaGgUGCgUUGC- -5'
5743 5' -56.3 NC_001806.1 + 148664 0.66 0.908316
Target:  5'- cACGGgauGCAG-AAGCGGUgCAUGCA-CGg -3'
miRNA:   3'- -UGCU---CGUCcUUCGCCAgGUGCGUuGC- -5'
5743 5' -56.3 NC_001806.1 + 147792 0.81 0.192458
Target:  5'- -gGGGCGGGggGCGGagCCugGCAugGg -3'
miRNA:   3'- ugCUCGUCCuuCGCCa-GGugCGUugC- -5'
5743 5' -56.3 NC_001806.1 + 147702 0.71 0.615723
Target:  5'- gGCGGGCcccGGAGGCGGcgcUCgCACGCA-CGg -3'
miRNA:   3'- -UGCUCGu--CCUUCGCC---AG-GUGCGUuGC- -5'
5743 5' -56.3 NC_001806.1 + 147496 0.67 0.86021
Target:  5'- gGCGGcGCcggAGGggGCGGcgCCGCGgGAgGg -3'
miRNA:   3'- -UGCU-CG---UCCuuCGCCa-GGUGCgUUgC- -5'
5743 5' -56.3 NC_001806.1 + 146832 0.69 0.736645
Target:  5'- -gGAGCAGGGugcGGCGGcUCCAgccggggacCGCGGCc -3'
miRNA:   3'- ugCUCGUCCU---UCGCC-AGGU---------GCGUUGc -5'
5743 5' -56.3 NC_001806.1 + 142160 0.66 0.882158
Target:  5'- cCGucGCGGGguGgGGUCCgACGUGGCGa -3'
miRNA:   3'- uGCu-CGUCCuuCgCCAGG-UGCGUUGC- -5'
5743 5' -56.3 NC_001806.1 + 140749 0.67 0.852477
Target:  5'- aACGAGgAGGucuUGGUgCACGCAAUGc -3'
miRNA:   3'- -UGCUCgUCCuucGCCAgGUGCGUUGC- -5'
5743 5' -56.3 NC_001806.1 + 139212 0.79 0.257858
Target:  5'- gACGAGCugcGGAGGCGG--CACGCGACGg -3'
miRNA:   3'- -UGCUCGu--CCUUCGCCagGUGCGUUGC- -5'
5743 5' -56.3 NC_001806.1 + 136976 0.69 0.746348
Target:  5'- cGCGAGCGuGGu-GCGGUCaugGCGGCGg -3'
miRNA:   3'- -UGCUCGU-CCuuCGCCAGgugCGUUGC- -5'
5743 5' -56.3 NC_001806.1 + 134241 0.66 0.875056
Target:  5'- -gGAGCgGGGggGCGGcCC-CgGCAGCc -3'
miRNA:   3'- ugCUCG-UCCuuCGCCaGGuG-CGUUGc -5'
5743 5' -56.3 NC_001806.1 + 133703 0.67 0.86021
Target:  5'- cCGgaGGCGGGGAGuCGGUCgGCGUccccGCGa -3'
miRNA:   3'- uGC--UCGUCCUUC-GCCAGgUGCGu---UGC- -5'
5743 5' -56.3 NC_001806.1 + 132777 0.73 0.51551
Target:  5'- cGCGGuGCGGGAGGCGG-UgGCGCggUGg -3'
miRNA:   3'- -UGCU-CGUCCUUCGCCaGgUGCGuuGC- -5'
5743 5' -56.3 NC_001806.1 + 132350 0.73 0.545047
Target:  5'- uGCGAGguGGGccuGCGG-CCACGCGGg- -3'
miRNA:   3'- -UGCUCguCCUu--CGCCaGGUGCGUUgc -5'
5743 5' -56.3 NC_001806.1 + 129074 0.66 0.908316
Target:  5'- cGCGAGCgccccgacggccAGGugcgugacuGUGGUCCGCGCGcCa -3'
miRNA:   3'- -UGCUCG------------UCCuu-------CGCCAGGUGCGUuGc -5'
5743 5' -56.3 NC_001806.1 + 127767 0.69 0.726851
Target:  5'- uGCGGGCcuGuGGCGGccgucucgcgaUCCGCGCAugGa -3'
miRNA:   3'- -UGCUCGucCuUCGCC-----------AGGUGCGUugC- -5'
5743 5' -56.3 NC_001806.1 + 117630 0.66 0.895694
Target:  5'- uUGAGCAGGAaaaAGgGGUacagcaCCGCGCuccCGg -3'
miRNA:   3'- uGCUCGUCCU---UCgCCA------GGUGCGuu-GC- -5'
5743 5' -56.3 NC_001806.1 + 113411 0.72 0.585219
Target:  5'- -gGAGCuGGggGUGGgacgCCACGCcAUGg -3'
miRNA:   3'- ugCUCGuCCuuCGCCa---GGUGCGuUGC- -5'
5743 5' -56.3 NC_001806.1 + 107722 0.67 0.852477
Target:  5'- uCGGuGCGGGggGCaGUCUGC-CAACGu -3'
miRNA:   3'- uGCU-CGUCCuuCGcCAGGUGcGUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.