Results 21 - 40 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5747 | 3' | -51.1 | NC_001806.1 | + | 46285 | 0.69 | 0.944638 |
Target: 5'- -------cAGAc--GCCCCCGCGUCGa -3' miRNA: 3'- uuuaaaaaUCUcguCGGGGGCGCAGC- -5' |
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5747 | 3' | -51.1 | NC_001806.1 | + | 145167 | 0.69 | 0.949183 |
Target: 5'- -------gAGGGC-GCCCCgGUGUCGu -3' miRNA: 3'- uuuaaaaaUCUCGuCGGGGgCGCAGC- -5' |
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5747 | 3' | -51.1 | NC_001806.1 | + | 3475 | 0.69 | 0.949183 |
Target: 5'- ------cUGGGcGCGGCgCCCgGCGUCGu -3' miRNA: 3'- uuuaaaaAUCU-CGUCG-GGGgCGCAGC- -5' |
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5747 | 3' | -51.1 | NC_001806.1 | + | 68736 | 0.68 | 0.953472 |
Target: 5'- -----gUUGGGGCAGCCCagCGCGa-- -3' miRNA: 3'- uuuaaaAAUCUCGUCGGGg-GCGCagc -5' |
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5747 | 3' | -51.1 | NC_001806.1 | + | 121642 | 0.68 | 0.957511 |
Target: 5'- -------cGGAGUccuGUCCCUGCGUCGc -3' miRNA: 3'- uuuaaaaaUCUCGu--CGGGGGCGCAGC- -5' |
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5747 | 3' | -51.1 | NC_001806.1 | + | 120012 | 0.68 | 0.957511 |
Target: 5'- --------cGAGguGCCCCUGCGcCa -3' miRNA: 3'- uuuaaaaauCUCguCGGGGGCGCaGc -5' |
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5747 | 3' | -51.1 | NC_001806.1 | + | 30915 | 0.68 | 0.961303 |
Target: 5'- -------cGGGGCcGUCCCCGCGggCGg -3' miRNA: 3'- uuuaaaaaUCUCGuCGGGGGCGCa-GC- -5' |
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5747 | 3' | -51.1 | NC_001806.1 | + | 66431 | 0.68 | 0.961303 |
Target: 5'- ------gUGGGGC-GCCCCCGCagGUCc -3' miRNA: 3'- uuuaaaaAUCUCGuCGGGGGCG--CAGc -5' |
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5747 | 3' | -51.1 | NC_001806.1 | + | 94823 | 0.68 | 0.964855 |
Target: 5'- --------cGGGCAGCCCCaCcCGUCGc -3' miRNA: 3'- uuuaaaaauCUCGUCGGGG-GcGCAGC- -5' |
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5747 | 3' | -51.1 | NC_001806.1 | + | 147201 | 0.68 | 0.968171 |
Target: 5'- -------aGGAcGCGGCCCCgGCGgCGg -3' miRNA: 3'- uuuaaaaaUCU-CGUCGGGGgCGCaGC- -5' |
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5747 | 3' | -51.1 | NC_001806.1 | + | 134248 | 0.68 | 0.968171 |
Target: 5'- -------gGGGGCGGCCCCgGCaGcCGg -3' miRNA: 3'- uuuaaaaaUCUCGUCGGGGgCG-CaGC- -5' |
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5747 | 3' | -51.1 | NC_001806.1 | + | 102961 | 0.68 | 0.968171 |
Target: 5'- -------gGGGGC-GCCCCCcCGUCGc -3' miRNA: 3'- uuuaaaaaUCUCGuCGGGGGcGCAGC- -5' |
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5747 | 3' | -51.1 | NC_001806.1 | + | 57898 | 0.68 | 0.968171 |
Target: 5'- --------cGAGC-GCCCCCGCuugGUCGu -3' miRNA: 3'- uuuaaaaauCUCGuCGGGGGCG---CAGC- -5' |
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5747 | 3' | -51.1 | NC_001806.1 | + | 113243 | 0.67 | 0.971258 |
Target: 5'- --------uGAGCuGCaCCCCGCGuUCGa -3' miRNA: 3'- uuuaaaaauCUCGuCG-GGGGCGC-AGC- -5' |
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5747 | 3' | -51.1 | NC_001806.1 | + | 21798 | 0.67 | 0.976778 |
Target: 5'- ---------cGGCAGCCCCCGgG-CGg -3' miRNA: 3'- uuuaaaaaucUCGUCGGGGGCgCaGC- -5' |
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5747 | 3' | -51.1 | NC_001806.1 | + | 72517 | 0.67 | 0.976778 |
Target: 5'- ------cUGGGGgAG-CCCUGCGUCGg -3' miRNA: 3'- uuuaaaaAUCUCgUCgGGGGCGCAGC- -5' |
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5747 | 3' | -51.1 | NC_001806.1 | + | 65237 | 0.67 | 0.979225 |
Target: 5'- -------cAGAGCGGCgCCgUGUGUCGc -3' miRNA: 3'- uuuaaaaaUCUCGUCG-GGgGCGCAGC- -5' |
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5747 | 3' | -51.1 | NC_001806.1 | + | 121980 | 0.67 | 0.979225 |
Target: 5'- -------cGGGGCAGacuuucCUCCCGCGUCu -3' miRNA: 3'- uuuaaaaaUCUCGUC------GGGGGCGCAGc -5' |
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5747 | 3' | -51.1 | NC_001806.1 | + | 19726 | 0.67 | 0.981476 |
Target: 5'- --------uGAGCccccuccuccGCCCCCGCGUCc -3' miRNA: 3'- uuuaaaaauCUCGu---------CGGGGGCGCAGc -5' |
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5747 | 3' | -51.1 | NC_001806.1 | + | 106714 | 0.67 | 0.981476 |
Target: 5'- --------cGGGCGGCCCCCGguaUCGg -3' miRNA: 3'- uuuaaaaauCUCGUCGGGGGCgc-AGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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