Results 21 - 40 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5747 | 3' | -51.1 | NC_001806.1 | + | 94823 | 0.68 | 0.964855 |
Target: 5'- --------cGGGCAGCCCCaCcCGUCGc -3' miRNA: 3'- uuuaaaaauCUCGUCGGGG-GcGCAGC- -5' |
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5747 | 3' | -51.1 | NC_001806.1 | + | 66431 | 0.68 | 0.961303 |
Target: 5'- ------gUGGGGC-GCCCCCGCagGUCc -3' miRNA: 3'- uuuaaaaAUCUCGuCGGGGGCG--CAGc -5' |
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5747 | 3' | -51.1 | NC_001806.1 | + | 30915 | 0.68 | 0.961303 |
Target: 5'- -------cGGGGCcGUCCCCGCGggCGg -3' miRNA: 3'- uuuaaaaaUCUCGuCGGGGGCGCa-GC- -5' |
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5747 | 3' | -51.1 | NC_001806.1 | + | 120012 | 0.68 | 0.957511 |
Target: 5'- --------cGAGguGCCCCUGCGcCa -3' miRNA: 3'- uuuaaaaauCUCguCGGGGGCGCaGc -5' |
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5747 | 3' | -51.1 | NC_001806.1 | + | 68736 | 0.68 | 0.953472 |
Target: 5'- -----gUUGGGGCAGCCCagCGCGa-- -3' miRNA: 3'- uuuaaaAAUCUCGUCGGGg-GCGCagc -5' |
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5747 | 3' | -51.1 | NC_001806.1 | + | 121642 | 0.68 | 0.957511 |
Target: 5'- -------cGGAGUccuGUCCCUGCGUCGc -3' miRNA: 3'- uuuaaaaaUCUCGu--CGGGGGCGCAGC- -5' |
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5747 | 3' | -51.1 | NC_001806.1 | + | 75891 | 0.69 | 0.944638 |
Target: 5'- ------cUGGAGaCGGCCCuuGCGUUu -3' miRNA: 3'- uuuaaaaAUCUC-GUCGGGggCGCAGc -5' |
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5747 | 3' | -51.1 | NC_001806.1 | + | 21296 | 0.69 | 0.934772 |
Target: 5'- -------gGGAG-GGCCCCCGCGgCGg -3' miRNA: 3'- uuuaaaaaUCUCgUCGGGGGCGCaGC- -5' |
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5747 | 3' | -51.1 | NC_001806.1 | + | 46285 | 0.69 | 0.944638 |
Target: 5'- -------cAGAc--GCCCCCGCGUCGa -3' miRNA: 3'- uuuaaaaaUCUcguCGGGGGCGCAGC- -5' |
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5747 | 3' | -51.1 | NC_001806.1 | + | 30263 | 0.69 | 0.929447 |
Target: 5'- -------cGGGGCccGGCCCCCGCGcCc -3' miRNA: 3'- uuuaaaaaUCUCG--UCGGGGGCGCaGc -5' |
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5747 | 3' | -51.1 | NC_001806.1 | + | 64271 | 0.69 | 0.944638 |
Target: 5'- ----------uGCAGCCCCCGC-UCGa -3' miRNA: 3'- uuuaaaaaucuCGUCGGGGGCGcAGC- -5' |
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5747 | 3' | -51.1 | NC_001806.1 | + | 65453 | 0.69 | 0.929447 |
Target: 5'- -------gGGAugccGCGGCCCCCGgGUCc -3' miRNA: 3'- uuuaaaaaUCU----CGUCGGGGGCgCAGc -5' |
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5747 | 3' | -51.1 | NC_001806.1 | + | 3475 | 0.69 | 0.949183 |
Target: 5'- ------cUGGGcGCGGCgCCCgGCGUCGu -3' miRNA: 3'- uuuaaaaAUCU-CGUCG-GGGgCGCAGC- -5' |
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5747 | 3' | -51.1 | NC_001806.1 | + | 145167 | 0.69 | 0.949183 |
Target: 5'- -------gAGGGC-GCCCCgGUGUCGu -3' miRNA: 3'- uuuaaaaaUCUCGuCGGGGgCGCAGC- -5' |
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5747 | 3' | -51.1 | NC_001806.1 | + | 69247 | 0.69 | 0.929447 |
Target: 5'- -------gGGAGCAGCCCuCCGCcggCGc -3' miRNA: 3'- uuuaaaaaUCUCGUCGGG-GGCGca-GC- -5' |
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5747 | 3' | -51.1 | NC_001806.1 | + | 7545 | 0.7 | 0.911895 |
Target: 5'- ------aUGGAGCAuacGCUcgggCCCGCGUCGg -3' miRNA: 3'- uuuaaaaAUCUCGU---CGG----GGGCGCAGC- -5' |
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5747 | 3' | -51.1 | NC_001806.1 | + | 72253 | 0.7 | 0.911895 |
Target: 5'- -------gAGGGCA-CCCCCGCGUUc -3' miRNA: 3'- uuuaaaaaUCUCGUcGGGGGCGCAGc -5' |
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5747 | 3' | -51.1 | NC_001806.1 | + | 18611 | 0.7 | 0.911895 |
Target: 5'- -------gGGGGCAuCCUCCGUGUCGg -3' miRNA: 3'- uuuaaaaaUCUCGUcGGGGGCGCAGC- -5' |
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5747 | 3' | -51.1 | NC_001806.1 | + | 21966 | 0.71 | 0.869866 |
Target: 5'- --------cGGGCAGCCCCgGCGggUCGa -3' miRNA: 3'- uuuaaaaauCUCGUCGGGGgCGC--AGC- -5' |
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5747 | 3' | -51.1 | NC_001806.1 | + | 96378 | 0.72 | 0.853924 |
Target: 5'- -------cAGGGC-GCCCCCGCG-CGg -3' miRNA: 3'- uuuaaaaaUCUCGuCGGGGGCGCaGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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