miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5747 3' -51.1 NC_001806.1 + 75194 0.66 0.983539
Target:  5'- ---------cGGCAGaCCCUGCGUCGa -3'
miRNA:   3'- uuuaaaaaucUCGUCgGGGGCGCAGC- -5'
5747 3' -51.1 NC_001806.1 + 149936 0.66 0.99062
Target:  5'- -------gGGGGCGGCCCgagucugccuggcugCUGCGUCu -3'
miRNA:   3'- uuuaaaaaUCUCGUCGGG---------------GGCGCAGc -5'
5747 3' -51.1 NC_001806.1 + 118905 0.66 0.988693
Target:  5'- -------gGGAGCuucuGGCCCCCGuCGUg- -3'
miRNA:   3'- uuuaaaaaUCUCG----UCGGGGGC-GCAgc -5'
5747 3' -51.1 NC_001806.1 + 53662 0.66 0.985423
Target:  5'- ---------cGGCAGCCCCagCGCGUUGc -3'
miRNA:   3'- uuuaaaaaucUCGUCGGGG--GCGCAGC- -5'
5747 3' -51.1 NC_001806.1 + 19940 0.66 0.983341
Target:  5'- uGGGUgggguGGGCGGgucuuccCCCCCGCGUCc -3'
miRNA:   3'- -UUUAaaaauCUCGUC-------GGGGGCGCAGc -5'
5747 3' -51.1 NC_001806.1 + 94093 0.66 0.988693
Target:  5'- ------aUAGAGCuGCUCCgGCGgugCGa -3'
miRNA:   3'- uuuaaaaAUCUCGuCGGGGgCGCa--GC- -5'
5747 3' -51.1 NC_001806.1 + 28160 0.66 0.990098
Target:  5'- -------gAGGGCcGCCCCCaGCG-CGa -3'
miRNA:   3'- uuuaaaaaUCUCGuCGGGGG-CGCaGC- -5'
5747 3' -51.1 NC_001806.1 + 86091 0.66 0.983539
Target:  5'- -------gAGGGCGGCCagCCGCG-CGa -3'
miRNA:   3'- uuuaaaaaUCUCGUCGGg-GGCGCaGC- -5'
5747 3' -51.1 NC_001806.1 + 34843 0.66 0.983539
Target:  5'- -------cGGcAGCcacGCCCCCaGCGUCGg -3'
miRNA:   3'- uuuaaaaaUC-UCGu--CGGGGG-CGCAGC- -5'
5747 3' -51.1 NC_001806.1 + 106714 0.67 0.981476
Target:  5'- --------cGGGCGGCCCCCGguaUCGg -3'
miRNA:   3'- uuuaaaaauCUCGUCGGGGGCgc-AGC- -5'
5747 3' -51.1 NC_001806.1 + 19726 0.67 0.981476
Target:  5'- --------uGAGCccccuccuccGCCCCCGCGUCc -3'
miRNA:   3'- uuuaaaaauCUCGu---------CGGGGGCGCAGc -5'
5747 3' -51.1 NC_001806.1 + 65237 0.67 0.979225
Target:  5'- -------cAGAGCGGCgCCgUGUGUCGc -3'
miRNA:   3'- uuuaaaaaUCUCGUCG-GGgGCGCAGC- -5'
5747 3' -51.1 NC_001806.1 + 72517 0.67 0.976778
Target:  5'- ------cUGGGGgAG-CCCUGCGUCGg -3'
miRNA:   3'- uuuaaaaAUCUCgUCgGGGGCGCAGC- -5'
5747 3' -51.1 NC_001806.1 + 21798 0.67 0.976778
Target:  5'- ---------cGGCAGCCCCCGgG-CGg -3'
miRNA:   3'- uuuaaaaaucUCGUCGGGGGCgCaGC- -5'
5747 3' -51.1 NC_001806.1 + 113243 0.67 0.971258
Target:  5'- --------uGAGCuGCaCCCCGCGuUCGa -3'
miRNA:   3'- uuuaaaaauCUCGuCG-GGGGCGC-AGC- -5'
5747 3' -51.1 NC_001806.1 + 121980 0.67 0.979225
Target:  5'- -------cGGGGCAGacuuucCUCCCGCGUCu -3'
miRNA:   3'- uuuaaaaaUCUCGUC------GGGGGCGCAGc -5'
5747 3' -51.1 NC_001806.1 + 147201 0.68 0.968171
Target:  5'- -------aGGAcGCGGCCCCgGCGgCGg -3'
miRNA:   3'- uuuaaaaaUCU-CGUCGGGGgCGCaGC- -5'
5747 3' -51.1 NC_001806.1 + 57898 0.68 0.968171
Target:  5'- --------cGAGC-GCCCCCGCuugGUCGu -3'
miRNA:   3'- uuuaaaaauCUCGuCGGGGGCG---CAGC- -5'
5747 3' -51.1 NC_001806.1 + 66431 0.68 0.961303
Target:  5'- ------gUGGGGC-GCCCCCGCagGUCc -3'
miRNA:   3'- uuuaaaaAUCUCGuCGGGGGCG--CAGc -5'
5747 3' -51.1 NC_001806.1 + 121642 0.68 0.957511
Target:  5'- -------cGGAGUccuGUCCCUGCGUCGc -3'
miRNA:   3'- uuuaaaaaUCUCGu--CGGGGGCGCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.