miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5747 3' -51.1 NC_001806.1 + 3475 0.69 0.949183
Target:  5'- ------cUGGGcGCGGCgCCCgGCGUCGu -3'
miRNA:   3'- uuuaaaaAUCU-CGUCG-GGGgCGCAGC- -5'
5747 3' -51.1 NC_001806.1 + 3979 0.72 0.844775
Target:  5'- ------cUGGAGCcaccccaGGCCUCCGCGUCc -3'
miRNA:   3'- uuuaaaaAUCUCG-------UCGGGGGCGCAGc -5'
5747 3' -51.1 NC_001806.1 + 7545 0.7 0.911895
Target:  5'- ------aUGGAGCAuacGCUcgggCCCGCGUCGg -3'
miRNA:   3'- uuuaaaaAUCUCGU---CGG----GGGCGCAGC- -5'
5747 3' -51.1 NC_001806.1 + 17214 1.08 0.008681
Target:  5'- uAAAUUUUUAGAGCAGCCCCCGCGUCGg -3'
miRNA:   3'- -UUUAAAAAUCUCGUCGGGGGCGCAGC- -5'
5747 3' -51.1 NC_001806.1 + 18611 0.7 0.911895
Target:  5'- -------gGGGGCAuCCUCCGUGUCGg -3'
miRNA:   3'- uuuaaaaaUCUCGUcGGGGGCGCAGC- -5'
5747 3' -51.1 NC_001806.1 + 19726 0.67 0.981476
Target:  5'- --------uGAGCccccuccuccGCCCCCGCGUCc -3'
miRNA:   3'- uuuaaaaauCUCGu---------CGGGGGCGCAGc -5'
5747 3' -51.1 NC_001806.1 + 19940 0.66 0.983341
Target:  5'- uGGGUgggguGGGCGGgucuuccCCCCCGCGUCc -3'
miRNA:   3'- -UUUAaaaauCUCGUC-------GGGGGCGCAGc -5'
5747 3' -51.1 NC_001806.1 + 21296 0.69 0.934772
Target:  5'- -------gGGAG-GGCCCCCGCGgCGg -3'
miRNA:   3'- uuuaaaaaUCUCgUCGGGGGCGCaGC- -5'
5747 3' -51.1 NC_001806.1 + 21798 0.67 0.976778
Target:  5'- ---------cGGCAGCCCCCGgG-CGg -3'
miRNA:   3'- uuuaaaaaucUCGUCGGGGGCgCaGC- -5'
5747 3' -51.1 NC_001806.1 + 21966 0.71 0.869866
Target:  5'- --------cGGGCAGCCCCgGCGggUCGa -3'
miRNA:   3'- uuuaaaaauCUCGUCGGGGgCGC--AGC- -5'
5747 3' -51.1 NC_001806.1 + 28160 0.66 0.990098
Target:  5'- -------gAGGGCcGCCCCCaGCG-CGa -3'
miRNA:   3'- uuuaaaaaUCUCGuCGGGGG-CGCaGC- -5'
5747 3' -51.1 NC_001806.1 + 29938 0.73 0.781999
Target:  5'- -------cGGGGCGGCUCCCGCcaGUCGc -3'
miRNA:   3'- uuuaaaaaUCUCGUCGGGGGCG--CAGC- -5'
5747 3' -51.1 NC_001806.1 + 30263 0.69 0.929447
Target:  5'- -------cGGGGCccGGCCCCCGCGcCc -3'
miRNA:   3'- uuuaaaaaUCUCG--UCGGGGGCGCaGc -5'
5747 3' -51.1 NC_001806.1 + 30915 0.68 0.961303
Target:  5'- -------cGGGGCcGUCCCCGCGggCGg -3'
miRNA:   3'- uuuaaaaaUCUCGuCGGGGGCGCa-GC- -5'
5747 3' -51.1 NC_001806.1 + 31175 0.76 0.624905
Target:  5'- --------cGAGUacccgacGGCCCCCGCGUCGg -3'
miRNA:   3'- uuuaaaaauCUCG-------UCGGGGGCGCAGC- -5'
5747 3' -51.1 NC_001806.1 + 34843 0.66 0.983539
Target:  5'- -------cGGcAGCcacGCCCCCaGCGUCGg -3'
miRNA:   3'- uuuaaaaaUC-UCGu--CGGGGG-CGCAGC- -5'
5747 3' -51.1 NC_001806.1 + 44135 0.74 0.721596
Target:  5'- -------cGGGGgGGCCUCCGCGUCa -3'
miRNA:   3'- uuuaaaaaUCUCgUCGGGGGCGCAGc -5'
5747 3' -51.1 NC_001806.1 + 46285 0.69 0.944638
Target:  5'- -------cAGAc--GCCCCCGCGUCGa -3'
miRNA:   3'- uuuaaaaaUCUcguCGGGGGCGCAGC- -5'
5747 3' -51.1 NC_001806.1 + 52825 0.75 0.690111
Target:  5'- -------gGGAGguGCCCCCGCGcCu -3'
miRNA:   3'- uuuaaaaaUCUCguCGGGGGCGCaGc -5'
5747 3' -51.1 NC_001806.1 + 53662 0.66 0.985423
Target:  5'- ---------cGGCAGCCCCagCGCGUUGc -3'
miRNA:   3'- uuuaaaaaucUCGUCGGGG--GCGCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.