miRNA display CGI


Results 1 - 20 of 49 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5747 3' -51.1 NC_001806.1 + 149936 0.66 0.99062
Target:  5'- -------gGGGGCGGCCCgagucugccuggcugCUGCGUCu -3'
miRNA:   3'- uuuaaaaaUCUCGUCGGG---------------GGCGCAGc -5'
5747 3' -51.1 NC_001806.1 + 147222 0.74 0.742182
Target:  5'- -------aAGAgGCGGCCCCCGCGggggUCGg -3'
miRNA:   3'- uuuaaaaaUCU-CGUCGGGGGCGC----AGC- -5'
5747 3' -51.1 NC_001806.1 + 147201 0.68 0.968171
Target:  5'- -------aGGAcGCGGCCCCgGCGgCGg -3'
miRNA:   3'- uuuaaaaaUCU-CGUCGGGGgCGCaGC- -5'
5747 3' -51.1 NC_001806.1 + 145167 0.69 0.949183
Target:  5'- -------gAGGGC-GCCCCgGUGUCGu -3'
miRNA:   3'- uuuaaaaaUCUCGuCGGGGgCGCAGC- -5'
5747 3' -51.1 NC_001806.1 + 134248 0.68 0.968171
Target:  5'- -------gGGGGCGGCCCCgGCaGcCGg -3'
miRNA:   3'- uuuaaaaaUCUCGUCGGGGgCG-CaGC- -5'
5747 3' -51.1 NC_001806.1 + 123189 0.72 0.828375
Target:  5'- -------cAGAGCAcCCCCCGgGUCGc -3'
miRNA:   3'- uuuaaaaaUCUCGUcGGGGGCgCAGC- -5'
5747 3' -51.1 NC_001806.1 + 121980 0.67 0.979225
Target:  5'- -------cGGGGCAGacuuucCUCCCGCGUCu -3'
miRNA:   3'- uuuaaaaaUCUCGUC------GGGGGCGCAGc -5'
5747 3' -51.1 NC_001806.1 + 121642 0.68 0.957511
Target:  5'- -------cGGAGUccuGUCCCUGCGUCGc -3'
miRNA:   3'- uuuaaaaaUCUCGu--CGGGGGCGCAGC- -5'
5747 3' -51.1 NC_001806.1 + 120012 0.68 0.957511
Target:  5'- --------cGAGguGCCCCUGCGcCa -3'
miRNA:   3'- uuuaaaaauCUCguCGGGGGCGCaGc -5'
5747 3' -51.1 NC_001806.1 + 118905 0.66 0.988693
Target:  5'- -------gGGAGCuucuGGCCCCCGuCGUg- -3'
miRNA:   3'- uuuaaaaaUCUCG----UCGGGGGC-GCAgc -5'
5747 3' -51.1 NC_001806.1 + 113243 0.67 0.971258
Target:  5'- --------uGAGCuGCaCCCCGCGuUCGa -3'
miRNA:   3'- uuuaaaaauCUCGuCG-GGGGCGC-AGC- -5'
5747 3' -51.1 NC_001806.1 + 106714 0.67 0.981476
Target:  5'- --------cGGGCGGCCCCCGguaUCGg -3'
miRNA:   3'- uuuaaaaauCUCGUCGGGGGCgc-AGC- -5'
5747 3' -51.1 NC_001806.1 + 102961 0.68 0.968171
Target:  5'- -------gGGGGC-GCCCCCcCGUCGc -3'
miRNA:   3'- uuuaaaaaUCUCGuCGGGGGcGCAGC- -5'
5747 3' -51.1 NC_001806.1 + 99534 0.72 0.837099
Target:  5'- -------aAGGGCcccGGCCUCCGCGUUGg -3'
miRNA:   3'- uuuaaaaaUCUCG---UCGGGGGCGCAGC- -5'
5747 3' -51.1 NC_001806.1 + 96378 0.72 0.853924
Target:  5'- -------cAGGGC-GCCCCCGCG-CGg -3'
miRNA:   3'- uuuaaaaaUCUCGuCGGGGGCGCaGC- -5'
5747 3' -51.1 NC_001806.1 + 94823 0.68 0.964855
Target:  5'- --------cGGGCAGCCCCaCcCGUCGc -3'
miRNA:   3'- uuuaaaaauCUCGUCGGGG-GcGCAGC- -5'
5747 3' -51.1 NC_001806.1 + 94093 0.66 0.988693
Target:  5'- ------aUAGAGCuGCUCCgGCGgugCGa -3'
miRNA:   3'- uuuaaaaAUCUCGuCGGGGgCGCa--GC- -5'
5747 3' -51.1 NC_001806.1 + 86091 0.66 0.983539
Target:  5'- -------gAGGGCGGCCagCCGCG-CGa -3'
miRNA:   3'- uuuaaaaaUCUCGUCGGg-GGCGCaGC- -5'
5747 3' -51.1 NC_001806.1 + 75891 0.69 0.944638
Target:  5'- ------cUGGAGaCGGCCCuuGCGUUu -3'
miRNA:   3'- uuuaaaaAUCUC-GUCGGGggCGCAGc -5'
5747 3' -51.1 NC_001806.1 + 75194 0.66 0.983539
Target:  5'- ---------cGGCAGaCCCUGCGUCGa -3'
miRNA:   3'- uuuaaaaaucUCGUCgGGGGCGCAGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.