miRNA display CGI


Results 1 - 20 of 49 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5747 3' -51.1 NC_001806.1 + 149936 0.66 0.99062
Target:  5'- -------gGGGGCGGCCCgagucugccuggcugCUGCGUCu -3'
miRNA:   3'- uuuaaaaaUCUCGUCGGG---------------GGCGCAGc -5'
5747 3' -51.1 NC_001806.1 + 72253 0.7 0.911895
Target:  5'- -------gAGGGCA-CCCCCGCGUUc -3'
miRNA:   3'- uuuaaaaaUCUCGUcGGGGGCGCAGc -5'
5747 3' -51.1 NC_001806.1 + 7545 0.7 0.911895
Target:  5'- ------aUGGAGCAuacGCUcgggCCCGCGUCGg -3'
miRNA:   3'- uuuaaaaAUCUCGU---CGG----GGGCGCAGC- -5'
5747 3' -51.1 NC_001806.1 + 30263 0.69 0.929447
Target:  5'- -------cGGGGCccGGCCCCCGCGcCc -3'
miRNA:   3'- uuuaaaaaUCUCG--UCGGGGGCGCaGc -5'
5747 3' -51.1 NC_001806.1 + 65453 0.69 0.929447
Target:  5'- -------gGGAugccGCGGCCCCCGgGUCc -3'
miRNA:   3'- uuuaaaaaUCU----CGUCGGGGGCgCAGc -5'
5747 3' -51.1 NC_001806.1 + 69247 0.69 0.929447
Target:  5'- -------gGGAGCAGCCCuCCGCcggCGc -3'
miRNA:   3'- uuuaaaaaUCUCGUCGGG-GGCGca-GC- -5'
5747 3' -51.1 NC_001806.1 + 21296 0.69 0.934772
Target:  5'- -------gGGAG-GGCCCCCGCGgCGg -3'
miRNA:   3'- uuuaaaaaUCUCgUCGGGGGCGCaGC- -5'
5747 3' -51.1 NC_001806.1 + 46285 0.69 0.944638
Target:  5'- -------cAGAc--GCCCCCGCGUCGa -3'
miRNA:   3'- uuuaaaaaUCUcguCGGGGGCGCAGC- -5'
5747 3' -51.1 NC_001806.1 + 64271 0.69 0.944638
Target:  5'- ----------uGCAGCCCCCGC-UCGa -3'
miRNA:   3'- uuuaaaaaucuCGUCGGGGGCGcAGC- -5'
5747 3' -51.1 NC_001806.1 + 18611 0.7 0.911895
Target:  5'- -------gGGGGCAuCCUCCGUGUCGg -3'
miRNA:   3'- uuuaaaaaUCUCGUcGGGGGCGCAGC- -5'
5747 3' -51.1 NC_001806.1 + 21966 0.71 0.869866
Target:  5'- --------cGGGCAGCCCCgGCGggUCGa -3'
miRNA:   3'- uuuaaaaauCUCGUCGGGGgCGC--AGC- -5'
5747 3' -51.1 NC_001806.1 + 96378 0.72 0.853924
Target:  5'- -------cAGGGC-GCCCCCGCG-CGg -3'
miRNA:   3'- uuuaaaaaUCUCGuCGGGGGCGCaGC- -5'
5747 3' -51.1 NC_001806.1 + 31175 0.76 0.624905
Target:  5'- --------cGAGUacccgacGGCCCCCGCGUCGg -3'
miRNA:   3'- uuuaaaaauCUCG-------UCGGGGGCGCAGC- -5'
5747 3' -51.1 NC_001806.1 + 52825 0.75 0.690111
Target:  5'- -------gGGAGguGCCCCCGCGcCu -3'
miRNA:   3'- uuuaaaaaUCUCguCGGGGGCGCaGc -5'
5747 3' -51.1 NC_001806.1 + 44135 0.74 0.721596
Target:  5'- -------cGGGGgGGCCUCCGCGUCa -3'
miRNA:   3'- uuuaaaaaUCUCgUCGGGGGCGCAGc -5'
5747 3' -51.1 NC_001806.1 + 147222 0.74 0.742182
Target:  5'- -------aAGAgGCGGCCCCCGCGggggUCGg -3'
miRNA:   3'- uuuaaaaaUCU-CGUCGGGGGCGC----AGC- -5'
5747 3' -51.1 NC_001806.1 + 29938 0.73 0.781999
Target:  5'- -------cGGGGCGGCUCCCGCcaGUCGc -3'
miRNA:   3'- uuuaaaaaUCUCGUCGGGGGCG--CAGC- -5'
5747 3' -51.1 NC_001806.1 + 123189 0.72 0.828375
Target:  5'- -------cAGAGCAcCCCCCGgGUCGc -3'
miRNA:   3'- uuuaaaaaUCUCGUcGGGGGCgCAGC- -5'
5747 3' -51.1 NC_001806.1 + 99534 0.72 0.837099
Target:  5'- -------aAGGGCcccGGCCUCCGCGUUGg -3'
miRNA:   3'- uuuaaaaaUCUCG---UCGGGGGCGCAGC- -5'
5747 3' -51.1 NC_001806.1 + 3979 0.72 0.844775
Target:  5'- ------cUGGAGCcaccccaGGCCUCCGCGUCc -3'
miRNA:   3'- uuuaaaaAUCUCG-------UCGGGGGCGCAGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.