Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5747 | 5' | -53.6 | NC_001806.1 | + | 62390 | 0.66 | 0.972151 |
Target: 5'- cCCCGCUGUugGUcGCCUUGCGAAcCUu -3' miRNA: 3'- -GGGCGGCAcgCAcCGGAAUGUUUaGA- -5' |
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5747 | 5' | -53.6 | NC_001806.1 | + | 64151 | 0.69 | 0.891144 |
Target: 5'- -aUGCCGcGCGUGGCCcgGCAGGc-- -3' miRNA: 3'- ggGCGGCaCGCACCGGaaUGUUUaga -5' |
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5747 | 5' | -53.6 | NC_001806.1 | + | 110250 | 0.69 | 0.891144 |
Target: 5'- cCCCGaCGUGCGUuGCacagGCAGGUCUc -3' miRNA: 3'- -GGGCgGCACGCAcCGgaa-UGUUUAGA- -5' |
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5747 | 5' | -53.6 | NC_001806.1 | + | 127758 | 0.68 | 0.90428 |
Target: 5'- gCUGCCGggUGCG-GGCCUgugGCGGccGUCUc -3' miRNA: 3'- gGGCGGC--ACGCaCCGGAa--UGUU--UAGA- -5' |
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5747 | 5' | -53.6 | NC_001806.1 | + | 148504 | 0.68 | 0.90428 |
Target: 5'- gCCCGCCcUGaCGgccuccucGGCCUccaUGCGGGUCUg -3' miRNA: 3'- -GGGCGGcAC-GCa-------CCGGA---AUGUUUAGA- -5' |
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5747 | 5' | -53.6 | NC_001806.1 | + | 49963 | 0.68 | 0.91049 |
Target: 5'- gCCGUCGUGCGgcUGGCCaucaACGGGUg- -3' miRNA: 3'- gGGCGGCACGC--ACCGGaa--UGUUUAga -5' |
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5747 | 5' | -53.6 | NC_001806.1 | + | 122532 | 0.68 | 0.91049 |
Target: 5'- uCCgGCCGUGgGUGGCCa--------- -3' miRNA: 3'- -GGgCGGCACgCACCGGaauguuuaga -5' |
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5747 | 5' | -53.6 | NC_001806.1 | + | 4498 | 0.68 | 0.91049 |
Target: 5'- gCCCGCgccucgCGUGCGUGGUCggcCGcGUCg -3' miRNA: 3'- -GGGCG------GCACGCACCGGaauGUuUAGa -5' |
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5747 | 5' | -53.6 | NC_001806.1 | + | 88950 | 0.68 | 0.92218 |
Target: 5'- cCCCGCCGggGCGUGGUCc-ACGc---- -3' miRNA: 3'- -GGGCGGCa-CGCACCGGaaUGUuuaga -5' |
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5747 | 5' | -53.6 | NC_001806.1 | + | 40939 | 0.69 | 0.884224 |
Target: 5'- uUCCGCCGUGgggccgacuuCGUGGC---ACAGGUCa -3' miRNA: 3'- -GGGCGGCAC----------GCACCGgaaUGUUUAGa -5' |
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5747 | 5' | -53.6 | NC_001806.1 | + | 24018 | 0.69 | 0.884224 |
Target: 5'- aCCgGCUGUGCG-GGCCggACAc---- -3' miRNA: 3'- -GGgCGGCACGCaCCGGaaUGUuuaga -5' |
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5747 | 5' | -53.6 | NC_001806.1 | + | 22971 | 0.69 | 0.862107 |
Target: 5'- cCCCGCCugcgcGCGUGGCUgcGCGAG-CUg -3' miRNA: 3'- -GGGCGGca---CGCACCGGaaUGUUUaGA- -5' |
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5747 | 5' | -53.6 | NC_001806.1 | + | 114937 | 0.74 | 0.634807 |
Target: 5'- aCCGCCGU-CGUGGCCacgGCAAccGUCc -3' miRNA: 3'- gGGCGGCAcGCACCGGaa-UGUU--UAGa -5' |
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5747 | 5' | -53.6 | NC_001806.1 | + | 135756 | 0.74 | 0.655528 |
Target: 5'- aCgGCCGUGCGgaaGGCCUgGCGAAgCUg -3' miRNA: 3'- gGgCGGCACGCa--CCGGAaUGUUUaGA- -5' |
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5747 | 5' | -53.6 | NC_001806.1 | + | 24277 | 0.73 | 0.665864 |
Target: 5'- gCCCGCCGUGCaGUGcGCCgUGCGc---- -3' miRNA: 3'- -GGGCGGCACG-CAC-CGGaAUGUuuaga -5' |
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5747 | 5' | -53.6 | NC_001806.1 | + | 103162 | 0.71 | 0.794298 |
Target: 5'- gCCGCUGUGCGcugGGCCUguaggACGAc--- -3' miRNA: 3'- gGGCGGCACGCa--CCGGAa----UGUUuaga -5' |
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5747 | 5' | -53.6 | NC_001806.1 | + | 4333 | 0.71 | 0.794298 |
Target: 5'- aCCGCCGcGCG-GGCCcgGCGGcgCUc -3' miRNA: 3'- gGGCGGCaCGCaCCGGaaUGUUuaGA- -5' |
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5747 | 5' | -53.6 | NC_001806.1 | + | 1330 | 0.71 | 0.812322 |
Target: 5'- uCCCGCCGcggggGCGUGGCCa--------- -3' miRNA: 3'- -GGGCGGCa----CGCACCGGaauguuuaga -5' |
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5747 | 5' | -53.6 | NC_001806.1 | + | 20089 | 0.7 | 0.84629 |
Target: 5'- uCCCGUCGUuCGUGGCCggcGCc-GUCUg -3' miRNA: 3'- -GGGCGGCAcGCACCGGaa-UGuuUAGA- -5' |
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5747 | 5' | -53.6 | NC_001806.1 | + | 22786 | 0.69 | 0.862107 |
Target: 5'- gCCCagGCCGgccGCGUGGCCgu-CGAGUg- -3' miRNA: 3'- -GGG--CGGCa--CGCACCGGaauGUUUAga -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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