miRNA display CGI


Results 21 - 28 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5747 5' -53.6 NC_001806.1 + 1330 0.71 0.812322
Target:  5'- uCCCGCCGcggggGCGUGGCCa--------- -3'
miRNA:   3'- -GGGCGGCa----CGCACCGGaauguuuaga -5'
5747 5' -53.6 NC_001806.1 + 20089 0.7 0.84629
Target:  5'- uCCCGUCGUuCGUGGCCggcGCc-GUCUg -3'
miRNA:   3'- -GGGCGGCAcGCACCGGaa-UGuuUAGA- -5'
5747 5' -53.6 NC_001806.1 + 22786 0.69 0.862107
Target:  5'- gCCCagGCCGgccGCGUGGCCgu-CGAGUg- -3'
miRNA:   3'- -GGG--CGGCa--CGCACCGGaauGUUUAga -5'
5747 5' -53.6 NC_001806.1 + 22971 0.69 0.862107
Target:  5'- cCCCGCCugcgcGCGUGGCUgcGCGAG-CUg -3'
miRNA:   3'- -GGGCGGca---CGCACCGGaaUGUUUaGA- -5'
5747 5' -53.6 NC_001806.1 + 24018 0.69 0.884224
Target:  5'- aCCgGCUGUGCG-GGCCggACAc---- -3'
miRNA:   3'- -GGgCGGCACGCaCCGGaaUGUuuaga -5'
5747 5' -53.6 NC_001806.1 + 40939 0.69 0.884224
Target:  5'- uUCCGCCGUGgggccgacuuCGUGGC---ACAGGUCa -3'
miRNA:   3'- -GGGCGGCAC----------GCACCGgaaUGUUUAGa -5'
5747 5' -53.6 NC_001806.1 + 64151 0.69 0.891144
Target:  5'- -aUGCCGcGCGUGGCCcgGCAGGc-- -3'
miRNA:   3'- ggGCGGCaCGCACCGGaaUGUUUaga -5'
5747 5' -53.6 NC_001806.1 + 62390 0.66 0.972151
Target:  5'- cCCCGCUGUugGUcGCCUUGCGAAcCUu -3'
miRNA:   3'- -GGGCGGCAcgCAcCGGAAUGUUUaGA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.