Results 21 - 28 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5747 | 5' | -53.6 | NC_001806.1 | + | 1330 | 0.71 | 0.812322 |
Target: 5'- uCCCGCCGcggggGCGUGGCCa--------- -3' miRNA: 3'- -GGGCGGCa----CGCACCGGaauguuuaga -5' |
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5747 | 5' | -53.6 | NC_001806.1 | + | 20089 | 0.7 | 0.84629 |
Target: 5'- uCCCGUCGUuCGUGGCCggcGCc-GUCUg -3' miRNA: 3'- -GGGCGGCAcGCACCGGaa-UGuuUAGA- -5' |
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5747 | 5' | -53.6 | NC_001806.1 | + | 22786 | 0.69 | 0.862107 |
Target: 5'- gCCCagGCCGgccGCGUGGCCgu-CGAGUg- -3' miRNA: 3'- -GGG--CGGCa--CGCACCGGaauGUUUAga -5' |
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5747 | 5' | -53.6 | NC_001806.1 | + | 22971 | 0.69 | 0.862107 |
Target: 5'- cCCCGCCugcgcGCGUGGCUgcGCGAG-CUg -3' miRNA: 3'- -GGGCGGca---CGCACCGGaaUGUUUaGA- -5' |
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5747 | 5' | -53.6 | NC_001806.1 | + | 24018 | 0.69 | 0.884224 |
Target: 5'- aCCgGCUGUGCG-GGCCggACAc---- -3' miRNA: 3'- -GGgCGGCACGCaCCGGaaUGUuuaga -5' |
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5747 | 5' | -53.6 | NC_001806.1 | + | 40939 | 0.69 | 0.884224 |
Target: 5'- uUCCGCCGUGgggccgacuuCGUGGC---ACAGGUCa -3' miRNA: 3'- -GGGCGGCAC----------GCACCGgaaUGUUUAGa -5' |
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5747 | 5' | -53.6 | NC_001806.1 | + | 64151 | 0.69 | 0.891144 |
Target: 5'- -aUGCCGcGCGUGGCCcgGCAGGc-- -3' miRNA: 3'- ggGCGGCaCGCACCGGaaUGUUUaga -5' |
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5747 | 5' | -53.6 | NC_001806.1 | + | 62390 | 0.66 | 0.972151 |
Target: 5'- cCCCGCUGUugGUcGCCUUGCGAAcCUu -3' miRNA: 3'- -GGGCGGCAcgCAcCGGAAUGUUUaGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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