Results 21 - 28 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5747 | 5' | -53.6 | NC_001806.1 | + | 80047 | 0.68 | 0.927658 |
Target: 5'- cCCCGCUGUcGCGUcGCUgucCGAAUCg -3' miRNA: 3'- -GGGCGGCA-CGCAcCGGaauGUUUAGa -5' |
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5747 | 5' | -53.6 | NC_001806.1 | + | 76883 | 0.68 | 0.927658 |
Target: 5'- aCCCGUCGccGCGUcgaGGCCcUGCGgaGGUCUc -3' miRNA: 3'- -GGGCGGCa-CGCA---CCGGaAUGU--UUAGA- -5' |
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5747 | 5' | -53.6 | NC_001806.1 | + | 107530 | 0.66 | 0.959204 |
Target: 5'- uUCGCCaUGCGcGGCCUcccUGCGcuuuGAUCUa -3' miRNA: 3'- gGGCGGcACGCaCCGGA---AUGU----UUAGA- -5' |
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5747 | 5' | -53.6 | NC_001806.1 | + | 139270 | 0.66 | 0.959204 |
Target: 5'- cCCUGCCuuaCGUGGUCUUGCGGGa-- -3' miRNA: 3'- -GGGCGGcacGCACCGGAAUGUUUaga -5' |
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5747 | 5' | -53.6 | NC_001806.1 | + | 2679 | 0.66 | 0.962769 |
Target: 5'- gCCGCCGUGUGgcugGGCCc--CGGGggCUg -3' miRNA: 3'- gGGCGGCACGCa---CCGGaauGUUUa-GA- -5' |
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5747 | 5' | -53.6 | NC_001806.1 | + | 20721 | 0.66 | 0.966112 |
Target: 5'- gCCCGCCGgggggGCGgggGGCCggcgGCcuccgCUg -3' miRNA: 3'- -GGGCGGCa----CGCa--CCGGaa--UGuuua-GA- -5' |
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5747 | 5' | -53.6 | NC_001806.1 | + | 23079 | 0.66 | 0.972151 |
Target: 5'- gCCGCCGUGCGcgccgUGaGCCU----GGUCg -3' miRNA: 3'- gGGCGGCACGC-----AC-CGGAauguUUAGa -5' |
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5747 | 5' | -53.6 | NC_001806.1 | + | 62390 | 0.66 | 0.972151 |
Target: 5'- cCCCGCUGUugGUcGCCUUGCGAAcCUu -3' miRNA: 3'- -GGGCGGCAcgCAcCGGAAUGUUUaGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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