miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5748 5' -60.9 NC_001806.1 + 121854 0.66 0.697038
Target:  5'- -gCGCCGGGUGGcgccugugugucuucUCuucguacauCAGUCGCCUa-- -3'
miRNA:   3'- uaGCGGCCCACC---------------AG---------GUCAGCGGAguc -5'
5748 5' -60.9 NC_001806.1 + 23960 0.66 0.683287
Target:  5'- -cCGCCGGaGUGGUCCGccgagCGCggCGGg -3'
miRNA:   3'- uaGCGGCC-CACCAGGUca---GCGgaGUC- -5'
5748 5' -60.9 NC_001806.1 + 27833 0.66 0.663512
Target:  5'- -gCGCCGGGuUGGUCCccggggacggGGcCGCCccgCGGu -3'
miRNA:   3'- uaGCGGCCC-ACCAGG----------UCaGCGGa--GUC- -5'
5748 5' -60.9 NC_001806.1 + 73115 0.67 0.643642
Target:  5'- --gGCCGGGccG-CCGGUCGCCgaggCGGg -3'
miRNA:   3'- uagCGGCCCacCaGGUCAGCGGa---GUC- -5'
5748 5' -60.9 NC_001806.1 + 31387 0.67 0.643642
Target:  5'- -gCGCUGGGUGGUCUcuGGccgCGCC-CAc -3'
miRNA:   3'- uaGCGGCCCACCAGG--UCa--GCGGaGUc -5'
5748 5' -60.9 NC_001806.1 + 89175 0.67 0.623736
Target:  5'- -gCGCUGGGuUGGcCCGGUCgGCUUCu- -3'
miRNA:   3'- uaGCGGCCC-ACCaGGUCAG-CGGAGuc -5'
5748 5' -60.9 NC_001806.1 + 52537 0.67 0.603855
Target:  5'- cUCGCCGGacgacGUGGUCCGcGggGCCUCc- -3'
miRNA:   3'- uAGCGGCC-----CACCAGGU-CagCGGAGuc -5'
5748 5' -60.9 NC_001806.1 + 75365 0.67 0.593941
Target:  5'- -aCGCgCGGGUGG-CCA-UCGCC-CAGc -3'
miRNA:   3'- uaGCG-GCCCACCaGGUcAGCGGaGUC- -5'
5748 5' -60.9 NC_001806.1 + 96435 0.68 0.554611
Target:  5'- -aCGCUGGG-GGUCCuGGUgGCgUCGGc -3'
miRNA:   3'- uaGCGGCCCaCCAGG-UCAgCGgAGUC- -5'
5748 5' -60.9 NC_001806.1 + 88952 0.7 0.469532
Target:  5'- -cCGCCGGGgcgUGGUCCAcGcCGCCccaCAGg -3'
miRNA:   3'- uaGCGGCCC---ACCAGGU-CaGCGGa--GUC- -5'
5748 5' -60.9 NC_001806.1 + 16299 1.05 0.001738
Target:  5'- gAUCGCCGGGUGGUCCAGUCGCCUCAGc -3'
miRNA:   3'- -UAGCGGCCCACCAGGUCAGCGGAGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.