miRNA display CGI


Results 41 - 60 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5749 3' -48 NC_001806.1 + 2519 0.68 0.99597
Target:  5'- -gGCGGCggGGgcggGCCcGGcGCACCGCg -3'
miRNA:   3'- gaCGCUGuaCUa---CGGuUUuUGUGGUG- -5'
5749 3' -48 NC_001806.1 + 23843 0.68 0.99597
Target:  5'- gCUGCGccGCAUGGcgGCCuggauGCGCCAg -3'
miRNA:   3'- -GACGC--UGUACUa-CGGuuuu-UGUGGUg -5'
5749 3' -48 NC_001806.1 + 143117 0.68 0.995263
Target:  5'- -gGgGGCGUGGcUGCCGGGAGgGgCCGCg -3'
miRNA:   3'- gaCgCUGUACU-ACGGUUUUUgU-GGUG- -5'
5749 3' -48 NC_001806.1 + 31811 0.68 0.994458
Target:  5'- cCUGCcacuGGCAUGGaGCCAGA---ACCACa -3'
miRNA:   3'- -GACG----CUGUACUaCGGUUUuugUGGUG- -5'
5749 3' -48 NC_001806.1 + 15614 0.69 0.992516
Target:  5'- uCUGCGGCGcUGggGCgAAGcGCGCCGu -3'
miRNA:   3'- -GACGCUGU-ACuaCGgUUUuUGUGGUg -5'
5749 3' -48 NC_001806.1 + 128520 0.69 0.991361
Target:  5'- gUGCGGCAUG--GCCAugcGgGCCGCa -3'
miRNA:   3'- gACGCUGUACuaCGGUuuuUgUGGUG- -5'
5749 3' -48 NC_001806.1 + 90864 0.69 0.990069
Target:  5'- -cGUGGCAcugcGAUGCCGAAacgugGACGCCGu -3'
miRNA:   3'- gaCGCUGUa---CUACGGUUU-----UUGUGGUg -5'
5749 3' -48 NC_001806.1 + 51288 0.69 0.988631
Target:  5'- cCUGCGGCuggcgcGGUGCCu--GACGCCu- -3'
miRNA:   3'- -GACGCUGua----CUACGGuuuUUGUGGug -5'
5749 3' -48 NC_001806.1 + 140027 0.69 0.988631
Target:  5'- -cGCGGCGaaagcGCCcGGAGCGCCACg -3'
miRNA:   3'- gaCGCUGUacua-CGGuUUUUGUGGUG- -5'
5749 3' -48 NC_001806.1 + 3435 0.69 0.988631
Target:  5'- -cGCGGCAgGcgGCCAGGcacucGACgGCCACg -3'
miRNA:   3'- gaCGCUGUaCuaCGGUUU-----UUG-UGGUG- -5'
5749 3' -48 NC_001806.1 + 92046 0.7 0.987036
Target:  5'- -cGCGACGgucUGGgcgagGCCAAccACGCCAUg -3'
miRNA:   3'- gaCGCUGU---ACUa----CGGUUuuUGUGGUG- -5'
5749 3' -48 NC_001806.1 + 21925 0.7 0.987036
Target:  5'- -cGCGGCgGUGGccgGCCGc-GACGCCACg -3'
miRNA:   3'- gaCGCUG-UACUa--CGGUuuUUGUGGUG- -5'
5749 3' -48 NC_001806.1 + 51787 0.7 0.985273
Target:  5'- -aGCGGggcCGUGGcgGCCAAGuACGCCGCc -3'
miRNA:   3'- gaCGCU---GUACUa-CGGUUUuUGUGGUG- -5'
5749 3' -48 NC_001806.1 + 131471 0.7 0.985273
Target:  5'- -gGCGGCGcUGuUGCCGGAAcGCACCGa -3'
miRNA:   3'- gaCGCUGU-ACuACGGUUUU-UGUGGUg -5'
5749 3' -48 NC_001806.1 + 112173 0.7 0.983334
Target:  5'- gCUGC-ACGUGcUGCUggaAAAGGCGCCGCc -3'
miRNA:   3'- -GACGcUGUACuACGG---UUUUUGUGGUG- -5'
5749 3' -48 NC_001806.1 + 98062 0.7 0.983334
Target:  5'- -gGCGACGUGAUGgCCGu---CuCCACg -3'
miRNA:   3'- gaCGCUGUACUAC-GGUuuuuGuGGUG- -5'
5749 3' -48 NC_001806.1 + 91751 0.7 0.981208
Target:  5'- aCUGCGAC---GUGCUggGAaacuACGCCGCc -3'
miRNA:   3'- -GACGCUGuacUACGGuuUU----UGUGGUG- -5'
5749 3' -48 NC_001806.1 + 1994 0.7 0.981208
Target:  5'- gCUGCacgccagguaGGCGUGcUGCCGc-GACACCGCg -3'
miRNA:   3'- -GACG----------CUGUACuACGGUuuUUGUGGUG- -5'
5749 3' -48 NC_001806.1 + 23213 0.7 0.978884
Target:  5'- -gGCGGCG-GcgGCCAGcgcaccGGACGCCGCc -3'
miRNA:   3'- gaCGCUGUaCuaCGGUU------UUUGUGGUG- -5'
5749 3' -48 NC_001806.1 + 75309 0.7 0.978884
Target:  5'- -aGCGGcCAUG--GCCGAcAGCGCCGCg -3'
miRNA:   3'- gaCGCU-GUACuaCGGUUuUUGUGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.