miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5749 3' -48 NC_001806.1 + 128205 0.67 0.998629
Target:  5'- -cGCGGCgAUGGUauUCAGGGAUACCGCg -3'
miRNA:   3'- gaCGCUG-UACUAc-GGUUUUUGUGGUG- -5'
5749 3' -48 NC_001806.1 + 133473 0.67 0.998629
Target:  5'- cCUGacaaCGGCAUGcGUGCCGGAGgaggacGCACuCACg -3'
miRNA:   3'- -GAC----GCUGUAC-UACGGUUUU------UGUG-GUG- -5'
5749 3' -48 NC_001806.1 + 106930 0.67 0.998629
Target:  5'- -cGCGACGUcGGguuuUGCUuucguGAACGCCGCc -3'
miRNA:   3'- gaCGCUGUA-CU----ACGGuu---UUUGUGGUG- -5'
5749 3' -48 NC_001806.1 + 24621 0.67 0.998337
Target:  5'- cCUGCGcGCGcUGggGCCugggcGCGCCGCu -3'
miRNA:   3'- -GACGC-UGU-ACuaCGGuuuu-UGUGGUG- -5'
5749 3' -48 NC_001806.1 + 8240 0.67 0.998337
Target:  5'- ---gGACA-GAUGCCGAuGAGcCACCGCa -3'
miRNA:   3'- gacgCUGUaCUACGGUU-UUU-GUGGUG- -5'
5749 3' -48 NC_001806.1 + 74982 0.67 0.997993
Target:  5'- gCUGgGGCAguaccgaGAUGCCcuGGAGCACC-Cg -3'
miRNA:   3'- -GACgCUGUa------CUACGGu-UUUUGUGGuG- -5'
5749 3' -48 NC_001806.1 + 131085 0.67 0.997993
Target:  5'- aCUGUuuGGCGUGcagaugGCCAAAAGCACgCAg -3'
miRNA:   3'- -GACG--CUGUACua----CGGUUUUUGUG-GUg -5'
5749 3' -48 NC_001806.1 + 9432 0.67 0.997993
Target:  5'- -gGCGGCGagauUGAUGCCcau--CGCUACg -3'
miRNA:   3'- gaCGCUGU----ACUACGGuuuuuGUGGUG- -5'
5749 3' -48 NC_001806.1 + 91061 0.67 0.997993
Target:  5'- cCUcCGuCAUG--GCCGGAGACGCCGCc -3'
miRNA:   3'- -GAcGCuGUACuaCGGUUUUUGUGGUG- -5'
5749 3' -48 NC_001806.1 + 109485 0.67 0.997993
Target:  5'- gUGgGGCGggGAUGCCGucAAACagGCCGCu -3'
miRNA:   3'- gACgCUGUa-CUACGGUu-UUUG--UGGUG- -5'
5749 3' -48 NC_001806.1 + 133205 0.67 0.997993
Target:  5'- aUGCGGCuuccggGGUGaUCGAGGACGCCcgGCg -3'
miRNA:   3'- gACGCUGua----CUAC-GGUUUUUGUGG--UG- -5'
5749 3' -48 NC_001806.1 + 45121 0.67 0.997993
Target:  5'- -aGCGACGgccguGUGCCAGu--CGCCAUc -3'
miRNA:   3'- gaCGCUGUac---UACGGUUuuuGUGGUG- -5'
5749 3' -48 NC_001806.1 + 100217 0.67 0.997993
Target:  5'- -gGCGACGUGGggaggguaaUGCUgggAAAGAC-CCGCa -3'
miRNA:   3'- gaCGCUGUACU---------ACGG---UUUUUGuGGUG- -5'
5749 3' -48 NC_001806.1 + 9799 0.67 0.997592
Target:  5'- gUGCGGguggGUGGgcucgGCCAAAuccGCGCCGCg -3'
miRNA:   3'- gACGCUg---UACUa----CGGUUUu--UGUGGUG- -5'
5749 3' -48 NC_001806.1 + 39057 0.67 0.997592
Target:  5'- cCUGCucguaGUGAagcGCCAcGAGCACCACc -3'
miRNA:   3'- -GACGcug--UACUa--CGGUuUUUGUGGUG- -5'
5749 3' -48 NC_001806.1 + 53859 0.67 0.997592
Target:  5'- gUGCGACG-GcgGCCAGcuguuuGGCAgCCGCg -3'
miRNA:   3'- gACGCUGUaCuaCGGUUu-----UUGU-GGUG- -5'
5749 3' -48 NC_001806.1 + 139102 0.68 0.996589
Target:  5'- gCUGCGAgAUGcUGaCCGGcu-CGCCGCg -3'
miRNA:   3'- -GACGCUgUACuAC-GGUUuuuGUGGUG- -5'
5749 3' -48 NC_001806.1 + 100864 0.68 0.996589
Target:  5'- -gGUGACGauaGUGCCGAG-GCGCCGCc -3'
miRNA:   3'- gaCGCUGUac-UACGGUUUuUGUGGUG- -5'
5749 3' -48 NC_001806.1 + 65366 0.68 0.996589
Target:  5'- -aGCGACGUGggGUUcccccGAAUGCCACg -3'
miRNA:   3'- gaCGCUGUACuaCGGuu---UUUGUGGUG- -5'
5749 3' -48 NC_001806.1 + 2519 0.68 0.99597
Target:  5'- -gGCGGCggGGgcggGCCcGGcGCACCGCg -3'
miRNA:   3'- gaCGCUGuaCUa---CGGuUUuUGUGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.