miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5749 3' -48 NC_001806.1 + 21925 0.7 0.987036
Target:  5'- -cGCGGCgGUGGccgGCCGc-GACGCCACg -3'
miRNA:   3'- gaCGCUG-UACUa--CGGUuuUUGUGGUG- -5'
5749 3' -48 NC_001806.1 + 140027 0.69 0.988631
Target:  5'- -cGCGGCGaaagcGCCcGGAGCGCCACg -3'
miRNA:   3'- gaCGCUGUacua-CGGuUUUUGUGGUG- -5'
5749 3' -48 NC_001806.1 + 3435 0.69 0.988631
Target:  5'- -cGCGGCAgGcgGCCAGGcacucGACgGCCACg -3'
miRNA:   3'- gaCGCUGUaCuaCGGUUU-----UUG-UGGUG- -5'
5749 3' -48 NC_001806.1 + 51288 0.69 0.988631
Target:  5'- cCUGCGGCuggcgcGGUGCCu--GACGCCu- -3'
miRNA:   3'- -GACGCUGua----CUACGGuuuUUGUGGug -5'
5749 3' -48 NC_001806.1 + 90864 0.69 0.990069
Target:  5'- -cGUGGCAcugcGAUGCCGAAacgugGACGCCGu -3'
miRNA:   3'- gaCGCUGUa---CUACGGUUU-----UUGUGGUg -5'
5749 3' -48 NC_001806.1 + 128520 0.69 0.991361
Target:  5'- gUGCGGCAUG--GCCAugcGgGCCGCa -3'
miRNA:   3'- gACGCUGUACuaCGGUuuuUgUGGUG- -5'
5749 3' -48 NC_001806.1 + 15614 0.69 0.992516
Target:  5'- uCUGCGGCGcUGggGCgAAGcGCGCCGu -3'
miRNA:   3'- -GACGCUGU-ACuaCGgUUUuUGUGGUg -5'
5749 3' -48 NC_001806.1 + 31811 0.68 0.994458
Target:  5'- cCUGCcacuGGCAUGGaGCCAGA---ACCACa -3'
miRNA:   3'- -GACG----CUGUACUaCGGUUUuugUGGUG- -5'
5749 3' -48 NC_001806.1 + 143117 0.68 0.995263
Target:  5'- -gGgGGCGUGGcUGCCGGGAGgGgCCGCg -3'
miRNA:   3'- gaCgCUGUACU-ACGGUUUUUgU-GGUG- -5'
5749 3' -48 NC_001806.1 + 136986 0.68 0.99597
Target:  5'- gUGCGGuCAUGGcggcgGCCGgcggGGAGCGCCAg -3'
miRNA:   3'- gACGCU-GUACUa----CGGU----UUUUGUGGUg -5'
5749 3' -48 NC_001806.1 + 2519 0.68 0.99597
Target:  5'- -gGCGGCggGGgcggGCCcGGcGCACCGCg -3'
miRNA:   3'- gaCGCUGuaCUa---CGGuUUuUGUGGUG- -5'
5749 3' -48 NC_001806.1 + 23843 0.68 0.99597
Target:  5'- gCUGCGccGCAUGGcgGCCuggauGCGCCAg -3'
miRNA:   3'- -GACGC--UGUACUa-CGGuuuu-UGUGGUg -5'
5749 3' -48 NC_001806.1 + 100864 0.68 0.996589
Target:  5'- -gGUGACGauaGUGCCGAG-GCGCCGCc -3'
miRNA:   3'- gaCGCUGUac-UACGGUUUuUGUGGUG- -5'
5749 3' -48 NC_001806.1 + 139102 0.68 0.996589
Target:  5'- gCUGCGAgAUGcUGaCCGGcu-CGCCGCg -3'
miRNA:   3'- -GACGCUgUACuAC-GGUUuuuGUGGUG- -5'
5749 3' -48 NC_001806.1 + 65366 0.68 0.996589
Target:  5'- -aGCGACGUGggGUUcccccGAAUGCCACg -3'
miRNA:   3'- gaCGCUGUACuaCGGuu---UUUGUGGUG- -5'
5749 3' -48 NC_001806.1 + 9799 0.67 0.997592
Target:  5'- gUGCGGguggGUGGgcucgGCCAAAuccGCGCCGCg -3'
miRNA:   3'- gACGCUg---UACUa----CGGUUUu--UGUGGUG- -5'
5749 3' -48 NC_001806.1 + 53859 0.67 0.997592
Target:  5'- gUGCGACG-GcgGCCAGcuguuuGGCAgCCGCg -3'
miRNA:   3'- gACGCUGUaCuaCGGUUu-----UUGU-GGUG- -5'
5749 3' -48 NC_001806.1 + 39057 0.67 0.997592
Target:  5'- cCUGCucguaGUGAagcGCCAcGAGCACCACc -3'
miRNA:   3'- -GACGcug--UACUa--CGGUuUUUGUGGUG- -5'
5749 3' -48 NC_001806.1 + 109485 0.67 0.997993
Target:  5'- gUGgGGCGggGAUGCCGucAAACagGCCGCu -3'
miRNA:   3'- gACgCUGUa-CUACGGUu-UUUG--UGGUG- -5'
5749 3' -48 NC_001806.1 + 91061 0.67 0.997993
Target:  5'- cCUcCGuCAUG--GCCGGAGACGCCGCc -3'
miRNA:   3'- -GAcGCuGUACuaCGGUUUUUGUGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.