miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5749 3' -48 NC_001806.1 + 15494 1.12 0.009967
Target:  5'- cCUGCGACAUGAUGCCAAAAACACCACa -3'
miRNA:   3'- -GACGCUGUACUACGGUUUUUGUGGUG- -5'
5749 3' -48 NC_001806.1 + 139813 0.76 0.831215
Target:  5'- -cGCGAuCAUGGUacgggGCCGGGAGCGCCAg -3'
miRNA:   3'- gaCGCU-GUACUA-----CGGUUUUUGUGGUg -5'
5749 3' -48 NC_001806.1 + 23895 0.74 0.902288
Target:  5'- -cGCGugGUGGUGCUGuacuCGCCGCu -3'
miRNA:   3'- gaCGCugUACUACGGUuuuuGUGGUG- -5'
5749 3' -48 NC_001806.1 + 28175 0.73 0.921368
Target:  5'- -cGCGAgGUGAgggGCCG--GGCGCCAUg -3'
miRNA:   3'- gaCGCUgUACUa--CGGUuuUUGUGGUG- -5'
5749 3' -48 NC_001806.1 + 74647 0.72 0.947717
Target:  5'- gCUGCGGCAggcgcggGCCAugGAUGCCGCc -3'
miRNA:   3'- -GACGCUGUacua---CGGUuuUUGUGGUG- -5'
5749 3' -48 NC_001806.1 + 2779 0.72 0.960314
Target:  5'- cCUGCGcCGcgGcgGCCcGGGGCGCCGCg -3'
miRNA:   3'- -GACGCuGUa-CuaCGGuUUUUGUGGUG- -5'
5749 3' -48 NC_001806.1 + 50505 0.72 0.961818
Target:  5'- -cGCGGuCGUGGggGCCGAGcacgaggcgcugggcGACACCGCa -3'
miRNA:   3'- gaCGCU-GUACUa-CGGUUU---------------UUGUGGUG- -5'
5749 3' -48 NC_001806.1 + 97428 0.71 0.963643
Target:  5'- cCUGgGACugGGUGCCAAAGcgcccgucggucuGCACCAUg -3'
miRNA:   3'- -GACgCUGuaCUACGGUUUU-------------UGUGGUG- -5'
5749 3' -48 NC_001806.1 + 48061 0.71 0.970641
Target:  5'- -cGCGGCuacgGAggaGCCAGGGGCGCCGu -3'
miRNA:   3'- gaCGCUGua--CUa--CGGUUUUUGUGGUg -5'
5749 3' -48 NC_001806.1 + 37374 0.71 0.97361
Target:  5'- -aGCGGCAgguuguggugGAUGCaCAucuuGCACCACg -3'
miRNA:   3'- gaCGCUGUa---------CUACG-GUuuu-UGUGGUG- -5'
5749 3' -48 NC_001806.1 + 132753 0.7 0.978884
Target:  5'- -gGCGGCAgccgGAUGCCuccuGC-CCGCg -3'
miRNA:   3'- gaCGCUGUa---CUACGGuuuuUGuGGUG- -5'
5749 3' -48 NC_001806.1 + 75309 0.7 0.978884
Target:  5'- -aGCGGcCAUG--GCCGAcAGCGCCGCg -3'
miRNA:   3'- gaCGCU-GUACuaCGGUUuUUGUGGUG- -5'
5749 3' -48 NC_001806.1 + 23213 0.7 0.978884
Target:  5'- -gGCGGCG-GcgGCCAGcgcaccGGACGCCGCc -3'
miRNA:   3'- gaCGCUGUaCuaCGGUU------UUUGUGGUG- -5'
5749 3' -48 NC_001806.1 + 91751 0.7 0.981208
Target:  5'- aCUGCGAC---GUGCUggGAaacuACGCCGCc -3'
miRNA:   3'- -GACGCUGuacUACGGuuUU----UGUGGUG- -5'
5749 3' -48 NC_001806.1 + 1994 0.7 0.981208
Target:  5'- gCUGCacgccagguaGGCGUGcUGCCGc-GACACCGCg -3'
miRNA:   3'- -GACG----------CUGUACuACGGUuuUUGUGGUG- -5'
5749 3' -48 NC_001806.1 + 98062 0.7 0.983334
Target:  5'- -gGCGACGUGAUGgCCGu---CuCCACg -3'
miRNA:   3'- gaCGCUGUACUAC-GGUuuuuGuGGUG- -5'
5749 3' -48 NC_001806.1 + 112173 0.7 0.983334
Target:  5'- gCUGC-ACGUGcUGCUggaAAAGGCGCCGCc -3'
miRNA:   3'- -GACGcUGUACuACGG---UUUUUGUGGUG- -5'
5749 3' -48 NC_001806.1 + 51787 0.7 0.985273
Target:  5'- -aGCGGggcCGUGGcgGCCAAGuACGCCGCc -3'
miRNA:   3'- gaCGCU---GUACUa-CGGUUUuUGUGGUG- -5'
5749 3' -48 NC_001806.1 + 131471 0.7 0.985273
Target:  5'- -gGCGGCGcUGuUGCCGGAAcGCACCGa -3'
miRNA:   3'- gaCGCUGU-ACuACGGUUUU-UGUGGUg -5'
5749 3' -48 NC_001806.1 + 21925 0.7 0.987036
Target:  5'- -cGCGGCgGUGGccgGCCGc-GACGCCACg -3'
miRNA:   3'- gaCGCUG-UACUa--CGGUuuUUGUGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.