miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5749 3' -48 NC_001806.1 + 1994 0.7 0.981208
Target:  5'- gCUGCacgccagguaGGCGUGcUGCCGc-GACACCGCg -3'
miRNA:   3'- -GACG----------CUGUACuACGGUuuUUGUGGUG- -5'
5749 3' -48 NC_001806.1 + 2519 0.68 0.99597
Target:  5'- -gGCGGCggGGgcggGCCcGGcGCACCGCg -3'
miRNA:   3'- gaCGCUGuaCUa---CGGuUUuUGUGGUG- -5'
5749 3' -48 NC_001806.1 + 2779 0.72 0.960314
Target:  5'- cCUGCGcCGcgGcgGCCcGGGGCGCCGCg -3'
miRNA:   3'- -GACGCuGUa-CuaCGGuUUUUGUGGUG- -5'
5749 3' -48 NC_001806.1 + 3435 0.69 0.988631
Target:  5'- -cGCGGCAgGcgGCCAGGcacucGACgGCCACg -3'
miRNA:   3'- gaCGCUGUaCuaCGGUUU-----UUG-UGGUG- -5'
5749 3' -48 NC_001806.1 + 4681 0.66 0.999404
Target:  5'- -gGCGACAggcgguccgUGggGuCCGGAuacGCGCCGCg -3'
miRNA:   3'- gaCGCUGU---------ACuaC-GGUUUu--UGUGGUG- -5'
5749 3' -48 NC_001806.1 + 8240 0.67 0.998337
Target:  5'- ---gGACA-GAUGCCGAuGAGcCACCGCa -3'
miRNA:   3'- gacgCUGUaCUACGGUU-UUU-GUGGUG- -5'
5749 3' -48 NC_001806.1 + 9432 0.67 0.997993
Target:  5'- -gGCGGCGagauUGAUGCCcau--CGCUACg -3'
miRNA:   3'- gaCGCUGU----ACUACGGuuuuuGUGGUG- -5'
5749 3' -48 NC_001806.1 + 9799 0.67 0.997592
Target:  5'- gUGCGGguggGUGGgcucgGCCAAAuccGCGCCGCg -3'
miRNA:   3'- gACGCUg---UACUa----CGGUUUu--UGUGGUG- -5'
5749 3' -48 NC_001806.1 + 15494 1.12 0.009967
Target:  5'- cCUGCGACAUGAUGCCAAAAACACCACa -3'
miRNA:   3'- -GACGCUGUACUACGGUUUUUGUGGUG- -5'
5749 3' -48 NC_001806.1 + 15614 0.69 0.992516
Target:  5'- uCUGCGGCGcUGggGCgAAGcGCGCCGu -3'
miRNA:   3'- -GACGCUGU-ACuaCGgUUUuUGUGGUg -5'
5749 3' -48 NC_001806.1 + 21326 0.66 0.999404
Target:  5'- -gGCGAg--GAcGCCGGGGACGCCGu -3'
miRNA:   3'- gaCGCUguaCUaCGGUUUUUGUGGUg -5'
5749 3' -48 NC_001806.1 + 21925 0.7 0.987036
Target:  5'- -cGCGGCgGUGGccgGCCGc-GACGCCACg -3'
miRNA:   3'- gaCGCUG-UACUa--CGGUuuUUGUGGUG- -5'
5749 3' -48 NC_001806.1 + 23010 0.66 0.999259
Target:  5'- -cGCGACGcgcUGGUGCuCAu--GCGCCuGCg -3'
miRNA:   3'- gaCGCUGU---ACUACG-GUuuuUGUGG-UG- -5'
5749 3' -48 NC_001806.1 + 23213 0.7 0.978884
Target:  5'- -gGCGGCG-GcgGCCAGcgcaccGGACGCCGCc -3'
miRNA:   3'- gaCGCUGUaCuaCGGUU------UUUGUGGUG- -5'
5749 3' -48 NC_001806.1 + 23843 0.68 0.99597
Target:  5'- gCUGCGccGCAUGGcgGCCuggauGCGCCAg -3'
miRNA:   3'- -GACGC--UGUACUa-CGGuuuu-UGUGGUg -5'
5749 3' -48 NC_001806.1 + 23895 0.74 0.902288
Target:  5'- -cGCGugGUGGUGCUGuacuCGCCGCu -3'
miRNA:   3'- gaCGCugUACUACGGUuuuuGUGGUG- -5'
5749 3' -48 NC_001806.1 + 24210 0.66 0.999259
Target:  5'- cCUGCGAC-UGGcccGCCGAcGGGC-CCGCg -3'
miRNA:   3'- -GACGCUGuACUa--CGGUU-UUUGuGGUG- -5'
5749 3' -48 NC_001806.1 + 24621 0.67 0.998337
Target:  5'- cCUGCGcGCGcUGggGCCugggcGCGCCGCu -3'
miRNA:   3'- -GACGC-UGU-ACuaCGGuuuu-UGUGGUG- -5'
5749 3' -48 NC_001806.1 + 25815 0.66 0.999404
Target:  5'- -cGUGACGUGugacGUGCgGAGuGCGCCGu -3'
miRNA:   3'- gaCGCUGUAC----UACGgUUUuUGUGGUg -5'
5749 3' -48 NC_001806.1 + 28175 0.73 0.921368
Target:  5'- -cGCGAgGUGAgggGCCG--GGCGCCAUg -3'
miRNA:   3'- gaCGCUgUACUa--CGGUuuUUGUGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.