miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5749 3' -48 NC_001806.1 + 150790 0.66 0.999524
Target:  5'- -aGCGGCuUGGUGCggagcuccCGGGAGCuCCGCg -3'
miRNA:   3'- gaCGCUGuACUACG--------GUUUUUGuGGUG- -5'
5749 3' -48 NC_001806.1 + 143117 0.68 0.995263
Target:  5'- -gGgGGCGUGGcUGCCGGGAGgGgCCGCg -3'
miRNA:   3'- gaCgCUGUACU-ACGGUUUUUgU-GGUG- -5'
5749 3' -48 NC_001806.1 + 141694 0.66 0.999259
Target:  5'- -gGUGAUAUGGguccugGCCGAuguaACCACg -3'
miRNA:   3'- gaCGCUGUACUa-----CGGUUuuugUGGUG- -5'
5749 3' -48 NC_001806.1 + 140027 0.69 0.988631
Target:  5'- -cGCGGCGaaagcGCCcGGAGCGCCACg -3'
miRNA:   3'- gaCGCUGUacua-CGGuUUUUGUGGUG- -5'
5749 3' -48 NC_001806.1 + 139813 0.76 0.831215
Target:  5'- -cGCGAuCAUGGUacgggGCCGGGAGCGCCAg -3'
miRNA:   3'- gaCGCU-GUACUA-----CGGUUUUUGUGGUg -5'
5749 3' -48 NC_001806.1 + 139102 0.68 0.996589
Target:  5'- gCUGCGAgAUGcUGaCCGGcu-CGCCGCg -3'
miRNA:   3'- -GACGCUgUACuAC-GGUUuuuGUGGUG- -5'
5749 3' -48 NC_001806.1 + 136986 0.68 0.99597
Target:  5'- gUGCGGuCAUGGcggcgGCCGgcggGGAGCGCCAg -3'
miRNA:   3'- gACGCU-GUACUa----CGGU----UUUUGUGGUg -5'
5749 3' -48 NC_001806.1 + 133473 0.67 0.998629
Target:  5'- cCUGacaaCGGCAUGcGUGCCGGAGgaggacGCACuCACg -3'
miRNA:   3'- -GAC----GCUGUAC-UACGGUUUU------UGUG-GUG- -5'
5749 3' -48 NC_001806.1 + 133205 0.67 0.997993
Target:  5'- aUGCGGCuuccggGGUGaUCGAGGACGCCcgGCg -3'
miRNA:   3'- gACGCUGua----CUAC-GGUUUUUGUGG--UG- -5'
5749 3' -48 NC_001806.1 + 132753 0.7 0.978884
Target:  5'- -gGCGGCAgccgGAUGCCuccuGC-CCGCg -3'
miRNA:   3'- gaCGCUGUa---CUACGGuuuuUGuGGUG- -5'
5749 3' -48 NC_001806.1 + 132349 0.66 0.998877
Target:  5'- gUGCGAgGUGGgccugcgGCCAcgcGGGCACCcGCa -3'
miRNA:   3'- gACGCUgUACUa------CGGUu--UUUGUGG-UG- -5'
5749 3' -48 NC_001806.1 + 131471 0.7 0.985273
Target:  5'- -gGCGGCGcUGuUGCCGGAAcGCACCGa -3'
miRNA:   3'- gaCGCUGU-ACuACGGUUUU-UGUGGUg -5'
5749 3' -48 NC_001806.1 + 131085 0.67 0.997993
Target:  5'- aCUGUuuGGCGUGcagaugGCCAAAAGCACgCAg -3'
miRNA:   3'- -GACG--CUGUACua----CGGUUUUUGUG-GUg -5'
5749 3' -48 NC_001806.1 + 129877 0.66 0.999404
Target:  5'- -cGUGACcacGUGggGCCA---AUACCGCg -3'
miRNA:   3'- gaCGCUG---UACuaCGGUuuuUGUGGUG- -5'
5749 3' -48 NC_001806.1 + 128520 0.69 0.991361
Target:  5'- gUGCGGCAUG--GCCAugcGgGCCGCa -3'
miRNA:   3'- gACGCUGUACuaCGGUuuuUgUGGUG- -5'
5749 3' -48 NC_001806.1 + 128205 0.67 0.998629
Target:  5'- -cGCGGCgAUGGUauUCAGGGAUACCGCg -3'
miRNA:   3'- gaCGCUG-UACUAc-GGUUUUUGUGGUG- -5'
5749 3' -48 NC_001806.1 + 113846 0.66 0.999259
Target:  5'- aUGCGGCGcGcgGCCcuGGACcGCCAUc -3'
miRNA:   3'- gACGCUGUaCuaCGGuuUUUG-UGGUG- -5'
5749 3' -48 NC_001806.1 + 112173 0.7 0.983334
Target:  5'- gCUGC-ACGUGcUGCUggaAAAGGCGCCGCc -3'
miRNA:   3'- -GACGcUGUACuACGG---UUUUUGUGGUG- -5'
5749 3' -48 NC_001806.1 + 109485 0.67 0.997993
Target:  5'- gUGgGGCGggGAUGCCGucAAACagGCCGCu -3'
miRNA:   3'- gACgCUGUa-CUACGGUu-UUUG--UGGUG- -5'
5749 3' -48 NC_001806.1 + 106930 0.67 0.998629
Target:  5'- -cGCGACGUcGGguuuUGCUuucguGAACGCCGCc -3'
miRNA:   3'- gaCGCUGUA-CU----ACGGuu---UUUGUGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.