miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5749 3' -48 NC_001806.1 + 29270 0.66 0.999524
Target:  5'- gCUGCGACAccuucccGUGCau---GCACCGCu -3'
miRNA:   3'- -GACGCUGUac-----UACGguuuuUGUGGUG- -5'
5749 3' -48 NC_001806.1 + 31811 0.68 0.994458
Target:  5'- cCUGCcacuGGCAUGGaGCCAGA---ACCACa -3'
miRNA:   3'- -GACG----CUGUACUaCGGUUUuugUGGUG- -5'
5749 3' -48 NC_001806.1 + 37374 0.71 0.97361
Target:  5'- -aGCGGCAgguuguggugGAUGCaCAucuuGCACCACg -3'
miRNA:   3'- gaCGCUGUa---------CUACG-GUuuu-UGUGGUG- -5'
5749 3' -48 NC_001806.1 + 39057 0.67 0.997592
Target:  5'- cCUGCucguaGUGAagcGCCAcGAGCACCACc -3'
miRNA:   3'- -GACGcug--UACUa--CGGUuUUUGUGGUG- -5'
5749 3' -48 NC_001806.1 + 45121 0.67 0.997993
Target:  5'- -aGCGACGgccguGUGCCAGu--CGCCAUc -3'
miRNA:   3'- gaCGCUGUac---UACGGUUuuuGUGGUG- -5'
5749 3' -48 NC_001806.1 + 46448 0.66 0.999085
Target:  5'- -gGCGGcCAUGcAUGCCcGGAugGCgGCg -3'
miRNA:   3'- gaCGCU-GUAC-UACGGuUUUugUGgUG- -5'
5749 3' -48 NC_001806.1 + 48061 0.71 0.970641
Target:  5'- -cGCGGCuacgGAggaGCCAGGGGCGCCGu -3'
miRNA:   3'- gaCGCUGua--CUa--CGGUUUUUGUGGUg -5'
5749 3' -48 NC_001806.1 + 50505 0.72 0.961818
Target:  5'- -cGCGGuCGUGGggGCCGAGcacgaggcgcugggcGACACCGCa -3'
miRNA:   3'- gaCGCU-GUACUa-CGGUUU---------------UUGUGGUG- -5'
5749 3' -48 NC_001806.1 + 51288 0.69 0.988631
Target:  5'- cCUGCGGCuggcgcGGUGCCu--GACGCCu- -3'
miRNA:   3'- -GACGCUGua----CUACGGuuuUUGUGGug -5'
5749 3' -48 NC_001806.1 + 51787 0.7 0.985273
Target:  5'- -aGCGGggcCGUGGcgGCCAAGuACGCCGCc -3'
miRNA:   3'- gaCGCU---GUACUa-CGGUUUuUGUGGUG- -5'
5749 3' -48 NC_001806.1 + 53463 0.66 0.999479
Target:  5'- uUGuCGACGaGAUuuaauaaaaauaaCCAAAAACACCACa -3'
miRNA:   3'- gAC-GCUGUaCUAc------------GGUUUUUGUGGUG- -5'
5749 3' -48 NC_001806.1 + 53859 0.67 0.997592
Target:  5'- gUGCGACG-GcgGCCAGcuguuuGGCAgCCGCg -3'
miRNA:   3'- gACGCUGUaCuaCGGUUu-----UUGU-GGUG- -5'
5749 3' -48 NC_001806.1 + 65366 0.68 0.996589
Target:  5'- -aGCGACGUGggGUUcccccGAAUGCCACg -3'
miRNA:   3'- gaCGCUGUACuaCGGuu---UUUGUGGUG- -5'
5749 3' -48 NC_001806.1 + 66271 0.67 0.998629
Target:  5'- -cGCG-CAUGcccGCCAcucgccGGGGCGCCACa -3'
miRNA:   3'- gaCGCuGUACua-CGGU------UUUUGUGGUG- -5'
5749 3' -48 NC_001806.1 + 74647 0.72 0.947717
Target:  5'- gCUGCGGCAggcgcggGCCAugGAUGCCGCc -3'
miRNA:   3'- -GACGCUGUacua---CGGUuuUUGUGGUG- -5'
5749 3' -48 NC_001806.1 + 74982 0.67 0.997993
Target:  5'- gCUGgGGCAguaccgaGAUGCCcuGGAGCACC-Cg -3'
miRNA:   3'- -GACgCUGUa------CUACGGu-UUUUGUGGuG- -5'
5749 3' -48 NC_001806.1 + 75309 0.7 0.978884
Target:  5'- -aGCGGcCAUG--GCCGAcAGCGCCGCg -3'
miRNA:   3'- gaCGCU-GUACuaCGGUUuUUGUGGUG- -5'
5749 3' -48 NC_001806.1 + 77005 0.66 0.999455
Target:  5'- -cGCGGCAUGcgagcagcuucgcGCCcugcAGGACACCACc -3'
miRNA:   3'- gaCGCUGUACua-----------CGGu---UUUUGUGGUG- -5'
5749 3' -48 NC_001806.1 + 77105 0.67 0.998629
Target:  5'- -gGCGuCcUGGgcGCCAAGAGCGCCGa -3'
miRNA:   3'- gaCGCuGuACUa-CGGUUUUUGUGGUg -5'
5749 3' -48 NC_001806.1 + 87399 0.66 0.998877
Target:  5'- gCUGCGGCcgGAcGCUu-GGGCGCCu- -3'
miRNA:   3'- -GACGCUGuaCUaCGGuuUUUGUGGug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.