miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5750 3' -56.3 NC_001806.1 + 14801 1.07 0.003293
Target:  5'- gACGGCAGGCACACGUAACGCACGCUAg -3'
miRNA:   3'- -UGCCGUCCGUGUGCAUUGCGUGCGAU- -5'
5750 3' -56.3 NC_001806.1 + 1849 0.77 0.289465
Target:  5'- gGCGGCgcgucgggguacAGGCGCGCGUGcgcggccuccACGCGCGCg- -3'
miRNA:   3'- -UGCCG------------UCCGUGUGCAU----------UGCGUGCGau -5'
5750 3' -56.3 NC_001806.1 + 56862 0.76 0.338841
Target:  5'- cGCGGCGGGCcCACcgauccaccagAGCGCGCGCUGc -3'
miRNA:   3'- -UGCCGUCCGuGUGca---------UUGCGUGCGAU- -5'
5750 3' -56.3 NC_001806.1 + 141637 0.76 0.348165
Target:  5'- -gGGgAGGCgGCACGUucgcGCGCACGCUAa -3'
miRNA:   3'- ugCCgUCCG-UGUGCAu---UGCGUGCGAU- -5'
5750 3' -56.3 NC_001806.1 + 134783 0.75 0.406123
Target:  5'- cCGGCacccAGGCGCgACGUcGACGCGCGCg- -3'
miRNA:   3'- uGCCG----UCCGUG-UGCA-UUGCGUGCGau -5'
5750 3' -56.3 NC_001806.1 + 63774 0.74 0.420197
Target:  5'- cACGGCuccAGGUACACGcacgcgccggucgGACGCGCGCUc -3'
miRNA:   3'- -UGCCG---UCCGUGUGCa------------UUGCGUGCGAu -5'
5750 3' -56.3 NC_001806.1 + 66859 0.74 0.460368
Target:  5'- -gGGCccGGGCACACGgcggUGACGCuCGCUAg -3'
miRNA:   3'- ugCCG--UCCGUGUGC----AUUGCGuGCGAU- -5'
5750 3' -56.3 NC_001806.1 + 13148 0.73 0.498584
Target:  5'- -aGGCAGGCugACGggggGAUGCGCaGCg- -3'
miRNA:   3'- ugCCGUCCGugUGCa---UUGCGUG-CGau -5'
5750 3' -56.3 NC_001806.1 + 74683 0.72 0.542169
Target:  5'- gACGGCAGaGCucgcccccgauGCGCGUGcccguuugcgggagcGCGCGCGCUc -3'
miRNA:   3'- -UGCCGUC-CG-----------UGUGCAU---------------UGCGUGCGAu -5'
5750 3' -56.3 NC_001806.1 + 132146 0.71 0.58797
Target:  5'- cUGGC-GGCGCGCGUugccgagcaucccGACGCGCgGCUGg -3'
miRNA:   3'- uGCCGuCCGUGUGCA-------------UUGCGUG-CGAU- -5'
5750 3' -56.3 NC_001806.1 + 140137 0.71 0.599291
Target:  5'- -aGGCGcGGCACACGgggugGGCGC-CGCg- -3'
miRNA:   3'- ugCCGU-CCGUGUGCa----UUGCGuGCGau -5'
5750 3' -56.3 NC_001806.1 + 24431 0.71 0.599291
Target:  5'- cGCGGC-GGCAacgugcgcuacCGCGU-GCGCACGCg- -3'
miRNA:   3'- -UGCCGuCCGU-----------GUGCAuUGCGUGCGau -5'
5750 3' -56.3 NC_001806.1 + 51116 0.71 0.609608
Target:  5'- cCuGCGGGCGCACGUgucgggGAgGCGCGCg- -3'
miRNA:   3'- uGcCGUCCGUGUGCA------UUgCGUGCGau -5'
5750 3' -56.3 NC_001806.1 + 93236 0.71 0.619943
Target:  5'- gGCGGCGGaGCGCACGaaa-GCuCGCUGu -3'
miRNA:   3'- -UGCCGUC-CGUGUGCauugCGuGCGAU- -5'
5750 3' -56.3 NC_001806.1 + 74649 0.71 0.630287
Target:  5'- uGCGGCAGGCGCGgGccaugGAUGC-CGCc- -3'
miRNA:   3'- -UGCCGUCCGUGUgCa----UUGCGuGCGau -5'
5750 3' -56.3 NC_001806.1 + 122370 0.71 0.630287
Target:  5'- gGCGGaaguGGCGCACGgc-CGCGuCGCUAa -3'
miRNA:   3'- -UGCCgu--CCGUGUGCauuGCGU-GCGAU- -5'
5750 3' -56.3 NC_001806.1 + 25912 0.7 0.640633
Target:  5'- gGCGGUccGGGCG-GCGUGcGCGCGCGCg- -3'
miRNA:   3'- -UGCCG--UCCGUgUGCAU-UGCGUGCGau -5'
5750 3' -56.3 NC_001806.1 + 3114 0.7 0.650972
Target:  5'- uCGGCAGGCGCGgGUccCGCggcaGCGCg- -3'
miRNA:   3'- uGCCGUCCGUGUgCAuuGCG----UGCGau -5'
5750 3' -56.3 NC_001806.1 + 1799 0.7 0.661295
Target:  5'- aGCGcGUGcGCACGCgGUAGCGCACGUUGc -3'
miRNA:   3'- -UGC-CGUcCGUGUG-CAUUGCGUGCGAU- -5'
5750 3' -56.3 NC_001806.1 + 106540 0.69 0.691066
Target:  5'- uCGGguGcgaugccGCGCugGUGcGCGCGCGCUAc -3'
miRNA:   3'- uGCCguC-------CGUGugCAU-UGCGUGCGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.