miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5750 3' -56.3 NC_001806.1 + 1799 0.7 0.661295
Target:  5'- aGCGcGUGcGCACGCgGUAGCGCACGUUGc -3'
miRNA:   3'- -UGC-CGUcCGUGUG-CAUUGCGUGCGAU- -5'
5750 3' -56.3 NC_001806.1 + 1849 0.77 0.289465
Target:  5'- gGCGGCgcgucgggguacAGGCGCGCGUGcgcggccuccACGCGCGCg- -3'
miRNA:   3'- -UGCCG------------UCCGUGUGCAU----------UGCGUGCGau -5'
5750 3' -56.3 NC_001806.1 + 2037 0.69 0.742257
Target:  5'- uCGGCGGGCcaguCGCaGgcGCGCACGgUGu -3'
miRNA:   3'- uGCCGUCCGu---GUG-CauUGCGUGCgAU- -5'
5750 3' -56.3 NC_001806.1 + 2519 0.68 0.761703
Target:  5'- gGCGGCGGGgGCGgGcccGGCGCACcGCg- -3'
miRNA:   3'- -UGCCGUCCgUGUgCa--UUGCGUG-CGau -5'
5750 3' -56.3 NC_001806.1 + 2666 0.66 0.858328
Target:  5'- gGCGGCcgcGGGCGCcgcCGUGugGCugGg-- -3'
miRNA:   3'- -UGCCG---UCCGUGu--GCAUugCGugCgau -5'
5750 3' -56.3 NC_001806.1 + 2739 0.67 0.807211
Target:  5'- uCGGCGGGCcggcgcgACACGgccacggGGCGCGgGCg- -3'
miRNA:   3'- uGCCGUCCG-------UGUGCa------UUGCGUgCGau -5'
5750 3' -56.3 NC_001806.1 + 3114 0.7 0.650972
Target:  5'- uCGGCAGGCGCGgGUccCGCggcaGCGCg- -3'
miRNA:   3'- uGCCGUCCGUGUgCAuuGCG----UGCGau -5'
5750 3' -56.3 NC_001806.1 + 3155 0.68 0.752034
Target:  5'- cCGGCgaccAGGCuCACGgcGCGCACGg-- -3'
miRNA:   3'- uGCCG----UCCGuGUGCauUGCGUGCgau -5'
5750 3' -56.3 NC_001806.1 + 3224 0.67 0.808102
Target:  5'- cCGcGCAGGCGCAUGagcaccAGCGCGuCGCg- -3'
miRNA:   3'- uGC-CGUCCGUGUGCa-----UUGCGU-GCGau -5'
5750 3' -56.3 NC_001806.1 + 3280 0.67 0.825584
Target:  5'- cGCGcGCAGGCgggGCGCGUcGGCGUGCGg-- -3'
miRNA:   3'- -UGC-CGUCCG---UGUGCA-UUGCGUGCgau -5'
5750 3' -56.3 NC_001806.1 + 3435 0.68 0.799113
Target:  5'- cGCGGCAGGCggccagGCACucGACGgcCACGCg- -3'
miRNA:   3'- -UGCCGUCCG------UGUGcaUUGC--GUGCGau -5'
5750 3' -56.3 NC_001806.1 + 3605 0.67 0.816929
Target:  5'- cCGGCGGGCAC-CGc-GCGCuCGCc- -3'
miRNA:   3'- uGCCGUCCGUGuGCauUGCGuGCGau -5'
5750 3' -56.3 NC_001806.1 + 3716 0.66 0.858328
Target:  5'- cGCGccaaCAGGgGCGCGUAggcgcgGCGCAgGCUGg -3'
miRNA:   3'- -UGCc---GUCCgUGUGCAU------UGCGUgCGAU- -5'
5750 3' -56.3 NC_001806.1 + 10086 0.67 0.83322
Target:  5'- gACGGcCAGGCGagacgucCACGUAcucgcgGCGCACGg-- -3'
miRNA:   3'- -UGCC-GUCCGU-------GUGCAU------UGCGUGCgau -5'
5750 3' -56.3 NC_001806.1 + 12157 0.69 0.742257
Target:  5'- cACGGCGGG-GCgACGUGG-GCACGCg- -3'
miRNA:   3'- -UGCCGUCCgUG-UGCAUUgCGUGCGau -5'
5750 3' -56.3 NC_001806.1 + 13148 0.73 0.498584
Target:  5'- -aGGCAGGCugACGggggGAUGCGCaGCg- -3'
miRNA:   3'- ugCCGUCCGugUGCa---UUGCGUG-CGau -5'
5750 3' -56.3 NC_001806.1 + 13554 0.66 0.88774
Target:  5'- uGCGGCAGGCGCGCuccaacACG-GCGUa- -3'
miRNA:   3'- -UGCCGUCCGUGUGcau---UGCgUGCGau -5'
5750 3' -56.3 NC_001806.1 + 14801 1.07 0.003293
Target:  5'- gACGGCAGGCACACGUAACGCACGCUAg -3'
miRNA:   3'- -UGCCGUCCGUGUGCAUUGCGUGCGAU- -5'
5750 3' -56.3 NC_001806.1 + 15719 0.67 0.83988
Target:  5'- uACGGCGGGCgauuguucccggccGCGCGggAGCGguaGCGCg- -3'
miRNA:   3'- -UGCCGUCCG--------------UGUGCa-UUGCg--UGCGau -5'
5750 3' -56.3 NC_001806.1 + 21307 0.69 0.722417
Target:  5'- cGCGGCGGGCACcgacgccgGCGagGACGCcggggACGCc- -3'
miRNA:   3'- -UGCCGUCCGUG--------UGCa-UUGCG-----UGCGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.