miRNA display CGI


Results 41 - 60 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5750 5' -59.8 NC_001806.1 + 70245 0.67 0.743663
Target:  5'- cCGUCGagcagCUGCGgcccCUGGuCCAGCUGCa -3'
miRNA:   3'- -GCAGCg----GGCGCa---GACCuGGUUGGCGg -5'
5750 5' -59.8 NC_001806.1 + 23489 0.67 0.734294
Target:  5'- --cCGCCCGCGcCccgUGGccgugucgcGCCGGcCCGCCg -3'
miRNA:   3'- gcaGCGGGCGCaG---ACC---------UGGUU-GGCGG- -5'
5750 5' -59.8 NC_001806.1 + 1687 0.67 0.734294
Target:  5'- cCGggCGCCaugGCGUCggUGGuCCccgaGGCCGCCg -3'
miRNA:   3'- -GCa-GCGGg--CGCAG--ACCuGG----UUGGCGG- -5'
5750 5' -59.8 NC_001806.1 + 7868 0.67 0.734294
Target:  5'- aCGUCGCCCcuGUGgccCUGGcggaCGGCgGCCa -3'
miRNA:   3'- -GCAGCGGG--CGCa--GACCug--GUUGgCGG- -5'
5750 5' -59.8 NC_001806.1 + 54619 0.67 0.73241
Target:  5'- cCGUagccaGCCCGgGguggucgcacgacucCUGGGCCGuaacggccgacuuaGCCGCCg -3'
miRNA:   3'- -GCAg----CGGGCgCa--------------GACCUGGU--------------UGGCGG- -5'
5750 5' -59.8 NC_001806.1 + 23709 0.67 0.724843
Target:  5'- uCGaUCGCCgCGCGgugCgccGGGCCcgcccCCGCCg -3'
miRNA:   3'- -GC-AGCGG-GCGCa--Ga--CCUGGuu---GGCGG- -5'
5750 5' -59.8 NC_001806.1 + 89569 0.67 0.715318
Target:  5'- gCGUCgGCCCGgcCGgCcGGGCUuaugGACCGCCg -3'
miRNA:   3'- -GCAG-CGGGC--GCaGaCCUGG----UUGGCGG- -5'
5750 5' -59.8 NC_001806.1 + 30730 0.67 0.715318
Target:  5'- cCGaCcCCCGCGg--GGGCCGccucuuccGCCGCCg -3'
miRNA:   3'- -GCaGcGGGCGCagaCCUGGU--------UGGCGG- -5'
5750 5' -59.8 NC_001806.1 + 89901 0.67 0.715318
Target:  5'- --aC-CCCGCGUU---GCCGGCCGCCg -3'
miRNA:   3'- gcaGcGGGCGCAGaccUGGUUGGCGG- -5'
5750 5' -59.8 NC_001806.1 + 12844 0.67 0.705727
Target:  5'- gCGUCG-CgGCGUcCUGGAUCGACgguaugUGCCa -3'
miRNA:   3'- -GCAGCgGgCGCA-GACCUGGUUG------GCGG- -5'
5750 5' -59.8 NC_001806.1 + 24205 0.67 0.705727
Target:  5'- gCG-CGCCUGCGaCUGGcccGCCGACgGgCCc -3'
miRNA:   3'- -GCaGCGGGCGCaGACC---UGGUUGgC-GG- -5'
5750 5' -59.8 NC_001806.1 + 43775 0.67 0.705727
Target:  5'- aCGcCGCCCcCGgagguuacgCUGGcGCCuGCCGCCc -3'
miRNA:   3'- -GCaGCGGGcGCa--------GACC-UGGuUGGCGG- -5'
5750 5' -59.8 NC_001806.1 + 76643 0.67 0.705727
Target:  5'- gGUCGCcgucccggcgaCCGUGgccaagacgCUGGACCAGgCGCg -3'
miRNA:   3'- gCAGCG-----------GGCGCa--------GACCUGGUUgGCGg -5'
5750 5' -59.8 NC_001806.1 + 131456 0.67 0.705727
Target:  5'- gGUCGUCCGC----GGACCGGCgGCg -3'
miRNA:   3'- gCAGCGGGCGcagaCCUGGUUGgCGg -5'
5750 5' -59.8 NC_001806.1 + 78777 0.67 0.705727
Target:  5'- aCG-CGCUCGCGggCcGGAC--GCCGCCu -3'
miRNA:   3'- -GCaGCGGGCGCa-GaCCUGguUGGCGG- -5'
5750 5' -59.8 NC_001806.1 + 65241 0.68 0.69608
Target:  5'- gCGgCGCCgUGUGUCgcgacaGGAacaaCAGCCGCCa -3'
miRNA:   3'- -GCaGCGG-GCGCAGa-----CCUg---GUUGGCGG- -5'
5750 5' -59.8 NC_001806.1 + 39199 0.68 0.69608
Target:  5'- -cUUGUCUGCGUUcuuggGGGCCGGgccCCGCCg -3'
miRNA:   3'- gcAGCGGGCGCAGa----CCUGGUU---GGCGG- -5'
5750 5' -59.8 NC_001806.1 + 150968 0.68 0.69608
Target:  5'- gGUCgGCCCGC-UCgcGGGCCcacgAGCCGCg -3'
miRNA:   3'- gCAG-CGGGCGcAGa-CCUGG----UUGGCGg -5'
5750 5' -59.8 NC_001806.1 + 7710 0.68 0.69608
Target:  5'- uGUUGCCCGCGgaccaCcGGGCCuucuuucgAACCGUg -3'
miRNA:   3'- gCAGCGGGCGCa----GaCCUGG--------UUGGCGg -5'
5750 5' -59.8 NC_001806.1 + 90252 0.68 0.686382
Target:  5'- aCGUCGCCguggCGCcccugGUCgUGGGCCuGACCGUg -3'
miRNA:   3'- -GCAGCGG----GCG-----CAG-ACCUGG-UUGGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.