miRNA display CGI


Results 21 - 40 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5750 5' -59.8 NC_001806.1 + 22054 0.68 0.647257
Target:  5'- cCGUgGCCCgGCG-CcGGGCCc-CCGCCc -3'
miRNA:   3'- -GCAgCGGG-CGCaGaCCUGGuuGGCGG- -5'
5750 5' -59.8 NC_001806.1 + 23050 0.66 0.771199
Target:  5'- gCGUgGCCgGCGgcagCgaGGccGCCGugGCCGCCg -3'
miRNA:   3'- -GCAgCGGgCGCa---Ga-CC--UGGU--UGGCGG- -5'
5750 5' -59.8 NC_001806.1 + 23102 0.72 0.448145
Target:  5'- gGUCGCCgGgGccCUGGGCCccgcGCUGCCg -3'
miRNA:   3'- gCAGCGGgCgCa-GACCUGGu---UGGCGG- -5'
5750 5' -59.8 NC_001806.1 + 23236 0.71 0.511671
Target:  5'- aCGcCGCCgaCGCG-CUGGcgGCCGccGCCGCCu -3'
miRNA:   3'- -GCaGCGG--GCGCaGACC--UGGU--UGGCGG- -5'
5750 5' -59.8 NC_001806.1 + 23489 0.67 0.734294
Target:  5'- --cCGCCCGCGcCccgUGGccgugucgcGCCGGcCCGCCg -3'
miRNA:   3'- gcaGCGGGCGCaG---ACC---------UGGUU-GGCGG- -5'
5750 5' -59.8 NC_001806.1 + 23580 0.66 0.771199
Target:  5'- aCGgcggCGCCCGCGgccgccgccCUGGagGCCuACUGCUc -3'
miRNA:   3'- -GCa---GCGGGCGCa--------GACC--UGGuUGGCGG- -5'
5750 5' -59.8 NC_001806.1 + 23709 0.67 0.724843
Target:  5'- uCGaUCGCCgCGCGgugCgccGGGCCcgcccCCGCCg -3'
miRNA:   3'- -GC-AGCGG-GCGCa--Ga--CCUGGuu---GGCGG- -5'
5750 5' -59.8 NC_001806.1 + 24205 0.67 0.705727
Target:  5'- gCG-CGCCUGCGaCUGGcccGCCGACgGgCCc -3'
miRNA:   3'- -GCaGCGGGCGCaGACC---UGGUUGgC-GG- -5'
5750 5' -59.8 NC_001806.1 + 24492 0.66 0.797705
Target:  5'- uGUC-CCCGCGcgaguaccgCcGGGCCGuGCUGCCg -3'
miRNA:   3'- gCAGcGGGCGCa--------GaCCUGGU-UGGCGG- -5'
5750 5' -59.8 NC_001806.1 + 24615 0.69 0.598149
Target:  5'- aCGcCGCCUGCGcgCgcugGGGCCuggGCgCGCCg -3'
miRNA:   3'- -GCaGCGGGCGCa-Ga---CCUGGu--UG-GCGG- -5'
5750 5' -59.8 NC_001806.1 + 24731 0.68 0.666872
Target:  5'- uG-CGCCCGCGcccugCUGGAgcCCGACgacgaCGCCc -3'
miRNA:   3'- gCaGCGGGCGCa----GACCU--GGUUG-----GCGG- -5'
5750 5' -59.8 NC_001806.1 + 24818 0.69 0.607951
Target:  5'- gCGcCGCCCGgGauucgCUGGGCCucggccacgGGCCGCa -3'
miRNA:   3'- -GCaGCGGGCgCa----GACCUGG---------UUGGCGg -5'
5750 5' -59.8 NC_001806.1 + 26499 0.67 0.743663
Target:  5'- gCG-CGCCCGCGgcc-GcCCcGCCGCCg -3'
miRNA:   3'- -GCaGCGGGCGCagacCuGGuUGGCGG- -5'
5750 5' -59.8 NC_001806.1 + 26932 0.77 0.239562
Target:  5'- gGUgCGCCaccugGUGUCUGGGCCucgGCCGCCc -3'
miRNA:   3'- gCA-GCGGg----CGCAGACCUGGu--UGGCGG- -5'
5750 5' -59.8 NC_001806.1 + 26983 0.68 0.686382
Target:  5'- uCGUgGgCCCGCGagcGGGCCGACCGg- -3'
miRNA:   3'- -GCAgC-GGGCGCagaCCUGGUUGGCgg -5'
5750 5' -59.8 NC_001806.1 + 30193 0.74 0.342947
Target:  5'- gCGUcCGCggCCGCGUCgGGACCcGCgCGCCc -3'
miRNA:   3'- -GCA-GCG--GGCGCAGaCCUGGuUG-GCGG- -5'
5750 5' -59.8 NC_001806.1 + 30730 0.67 0.715318
Target:  5'- cCGaCcCCCGCGg--GGGCCGccucuuccGCCGCCg -3'
miRNA:   3'- -GCaGcGGGCGCagaCCUGGU--------UGGCGG- -5'
5750 5' -59.8 NC_001806.1 + 33095 0.69 0.637429
Target:  5'- gCGUCGCgUGCcggcgagcggGUCcggacgGGGCCcgGACCGCCg -3'
miRNA:   3'- -GCAGCGgGCG----------CAGa-----CCUGG--UUGGCGG- -5'
5750 5' -59.8 NC_001806.1 + 37702 0.7 0.572788
Target:  5'- gGUCGaccgCCGCGcgCUcggagauggagcgcaGGACCAACCGCg -3'
miRNA:   3'- gCAGCg---GGCGCa-GA---------------CCUGGUUGGCGg -5'
5750 5' -59.8 NC_001806.1 + 38249 0.71 0.483945
Target:  5'- gGUaCGCCgGgGUCUucuggacgagacGGGCgGACCGCCg -3'
miRNA:   3'- gCA-GCGGgCgCAGA------------CCUGgUUGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.