miRNA display CGI


Results 1 - 20 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5750 5' -59.8 NC_001806.1 + 376 0.76 0.274934
Target:  5'- gCG-CGCCCGCGgg-GGGCCcgGGCUGCCa -3'
miRNA:   3'- -GCaGCGGGCGCagaCCUGG--UUGGCGG- -5'
5750 5' -59.8 NC_001806.1 + 1538 0.68 0.676644
Target:  5'- aGUCccuccgcgGCCCGCGcCaccGGGCCGggccggcgcgcACCGCCu -3'
miRNA:   3'- gCAG--------CGGGCGCaGa--CCUGGU-----------UGGCGG- -5'
5750 5' -59.8 NC_001806.1 + 1687 0.67 0.734294
Target:  5'- cCGggCGCCaugGCGUCggUGGuCCccgaGGCCGCCg -3'
miRNA:   3'- -GCa-GCGGg--CGCAG--ACCuGG----UUGGCGG- -5'
5750 5' -59.8 NC_001806.1 + 2086 0.68 0.647257
Target:  5'- gGUCGCCgGCG-CUGGcgAgCAGCC-CCa -3'
miRNA:   3'- gCAGCGGgCGCaGACC--UgGUUGGcGG- -5'
5750 5' -59.8 NC_001806.1 + 2227 0.67 0.743663
Target:  5'- uGUCcgGCCCGCacagccggUUGG-CCAggGCCGCCa -3'
miRNA:   3'- gCAG--CGGGCGca------GACCuGGU--UGGCGG- -5'
5750 5' -59.8 NC_001806.1 + 2564 0.68 0.676644
Target:  5'- ---gGCCCGCGggucaaacaUgaGGGCCggUCGCCa -3'
miRNA:   3'- gcagCGGGCGC---------AgaCCUGGuuGGCGG- -5'
5750 5' -59.8 NC_001806.1 + 2677 0.69 0.58837
Target:  5'- gCGcCGCCgUGUGgCUGGGCCccgggggcuGCCGCCg -3'
miRNA:   3'- -GCaGCGG-GCGCaGACCUGGu--------UGGCGG- -5'
5750 5' -59.8 NC_001806.1 + 3017 0.76 0.274934
Target:  5'- gCGUCGgCgGCGUCcGGugCGcugGCCGCCg -3'
miRNA:   3'- -GCAGCgGgCGCAGaCCugGU---UGGCGG- -5'
5750 5' -59.8 NC_001806.1 + 3530 0.68 0.666872
Target:  5'- uCGUCGCCCcccgcgggggagGCGggcgCggcGGA-CAGCCGCCc -3'
miRNA:   3'- -GCAGCGGG------------CGCa---Ga--CCUgGUUGGCGG- -5'
5750 5' -59.8 NC_001806.1 + 4048 0.7 0.540033
Target:  5'- gCGUCGCCCaGC-UCgGGcGCCcacacGGCCGCCg -3'
miRNA:   3'- -GCAGCGGG-CGcAGaCC-UGG-----UUGGCGG- -5'
5750 5' -59.8 NC_001806.1 + 4650 0.71 0.511671
Target:  5'- aCGUC-UCCGCGgcggCUGGGCCGGCgGgCg -3'
miRNA:   3'- -GCAGcGGGCGCa---GACCUGGUUGgCgG- -5'
5750 5' -59.8 NC_001806.1 + 4935 0.69 0.58837
Target:  5'- -cUCGCCgGCGUC-GGugC--CCGCCg -3'
miRNA:   3'- gcAGCGGgCGCAGaCCugGuuGGCGG- -5'
5750 5' -59.8 NC_001806.1 + 7558 0.73 0.373356
Target:  5'- uCGg-GCCCGCGUCgGGAuCCAcACCGCg -3'
miRNA:   3'- -GCagCGGGCGCAGaCCU-GGU-UGGCGg -5'
5750 5' -59.8 NC_001806.1 + 7710 0.68 0.69608
Target:  5'- uGUUGCCCGCGgaccaCcGGGCCuucuuucgAACCGUg -3'
miRNA:   3'- gCAGCGGGCGCa----GaCCUGG--------UUGGCGg -5'
5750 5' -59.8 NC_001806.1 + 7868 0.67 0.734294
Target:  5'- aCGUCGCCCcuGUGgccCUGGcggaCGGCgGCCa -3'
miRNA:   3'- -GCAGCGGG--CGCa--GACCug--GUUGgCGG- -5'
5750 5' -59.8 NC_001806.1 + 12844 0.67 0.705727
Target:  5'- gCGUCG-CgGCGUcCUGGAUCGACgguaugUGCCa -3'
miRNA:   3'- -GCAGCgGgCGCA-GACCUGGUUG------GCGG- -5'
5750 5' -59.8 NC_001806.1 + 14836 1.12 0.001027
Target:  5'- gCGUCGCCCGCGUCUGGACCAACCGCCa -3'
miRNA:   3'- -GCAGCGGGCGCAGACCUGGUUGGCGG- -5'
5750 5' -59.8 NC_001806.1 + 20120 0.67 0.752943
Target:  5'- gCGUCGgUCGCG-CcGGGCCuuuauGugCGCCg -3'
miRNA:   3'- -GCAGCgGGCGCaGaCCUGG-----UugGCGG- -5'
5750 5' -59.8 NC_001806.1 + 21579 0.75 0.294135
Target:  5'- uGUCGCCgCGCccgCcGGcCCAGCCGCCg -3'
miRNA:   3'- gCAGCGG-GCGca-GaCCuGGUUGGCGG- -5'
5750 5' -59.8 NC_001806.1 + 21916 0.68 0.647257
Target:  5'- cCGg-GCCCGCG-CggcgGuGGCCGGCCGCg -3'
miRNA:   3'- -GCagCGGGCGCaGa---C-CUGGUUGGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.