miRNA display CGI


Results 1 - 20 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5750 5' -59.8 NC_001806.1 + 14836 1.12 0.001027
Target:  5'- gCGUCGCCCGCGUCUGGACCAACCGCCa -3'
miRNA:   3'- -GCAGCGGGCGCAGACCUGGUUGGCGG- -5'
5750 5' -59.8 NC_001806.1 + 123203 0.77 0.23405
Target:  5'- gGUCGCCCGCaGgguggcggaaUGGACCGagauGCCGCCc -3'
miRNA:   3'- gCAGCGGGCG-Cag--------ACCUGGU----UGGCGG- -5'
5750 5' -59.8 NC_001806.1 + 26932 0.77 0.239562
Target:  5'- gGUgCGCCaccugGUGUCUGGGCCucgGCCGCCc -3'
miRNA:   3'- gCA-GCGGg----CGCAGACCUGGu--UGGCGG- -5'
5750 5' -59.8 NC_001806.1 + 136467 0.76 0.250911
Target:  5'- uGUCGCuuGCGUaauauggGGACCAGCC-CCa -3'
miRNA:   3'- gCAGCGggCGCAga-----CCUGGUUGGcGG- -5'
5750 5' -59.8 NC_001806.1 + 121657 0.76 0.262699
Target:  5'- gCGUCGcCCCGUGUCugUGGGCCAagAUgGCCc -3'
miRNA:   3'- -GCAGC-GGGCGCAG--ACCUGGU--UGgCGG- -5'
5750 5' -59.8 NC_001806.1 + 3017 0.76 0.274934
Target:  5'- gCGUCGgCgGCGUCcGGugCGcugGCCGCCg -3'
miRNA:   3'- -GCAGCgGgCGCAGaCCugGU---UGGCGG- -5'
5750 5' -59.8 NC_001806.1 + 376 0.76 0.274934
Target:  5'- gCG-CGCCCGCGgg-GGGCCcgGGCUGCCa -3'
miRNA:   3'- -GCaGCGGGCGCagaCCUGG--UUGGCGG- -5'
5750 5' -59.8 NC_001806.1 + 21579 0.75 0.294135
Target:  5'- uGUCGCCgCGCccgCcGGcCCAGCCGCCg -3'
miRNA:   3'- gCAGCGG-GCGca-GaCCuGGUUGGCGG- -5'
5750 5' -59.8 NC_001806.1 + 135043 0.74 0.335629
Target:  5'- cCGggCGaCCGCGaUCUGGACCGGCC-CCg -3'
miRNA:   3'- -GCa-GCgGGCGC-AGACCUGGUUGGcGG- -5'
5750 5' -59.8 NC_001806.1 + 102473 0.74 0.342947
Target:  5'- uCGUCGCgguaGCGguaCUGuGGCCGGCCGCCc -3'
miRNA:   3'- -GCAGCGgg--CGCa--GAC-CUGGUUGGCGG- -5'
5750 5' -59.8 NC_001806.1 + 30193 0.74 0.342947
Target:  5'- gCGUcCGCggCCGCGUCgGGACCcGCgCGCCc -3'
miRNA:   3'- -GCA-GCG--GGCGCAGaCCUGGuUG-GCGG- -5'
5750 5' -59.8 NC_001806.1 + 7558 0.73 0.373356
Target:  5'- uCGg-GCCCGCGUCgGGAuCCAcACCGCg -3'
miRNA:   3'- -GCagCGGGCGCAGaCCU-GGU-UGGCGg -5'
5750 5' -59.8 NC_001806.1 + 67060 0.73 0.405545
Target:  5'- gCGUCGCgCGCGUCguacgagGcGGCaCAcGCCGCCa -3'
miRNA:   3'- -GCAGCGgGCGCAGa------C-CUG-GU-UGGCGG- -5'
5750 5' -59.8 NC_001806.1 + 54847 0.73 0.408858
Target:  5'- aCGUCaucuggcaggugaagGUCCGCGgggGGACCuGGCCGCCg -3'
miRNA:   3'- -GCAG---------------CGGGCGCagaCCUGG-UUGGCGG- -5'
5750 5' -59.8 NC_001806.1 + 23102 0.72 0.448145
Target:  5'- gGUCGCCgGgGccCUGGGCCccgcGCUGCCg -3'
miRNA:   3'- gCAGCGGgCgCa-GACCUGGu---UGGCGG- -5'
5750 5' -59.8 NC_001806.1 + 131881 0.72 0.456959
Target:  5'- gGcCGCCCGCGcCgcgacgacGCCGGCCGCCu -3'
miRNA:   3'- gCaGCGGGCGCaGacc-----UGGUUGGCGG- -5'
5750 5' -59.8 NC_001806.1 + 101893 0.71 0.474862
Target:  5'- --cCG-CCGCGUCgacccGACCGGCCGCCc -3'
miRNA:   3'- gcaGCgGGCGCAGac---CUGGUUGGCGG- -5'
5750 5' -59.8 NC_001806.1 + 38249 0.71 0.483945
Target:  5'- gGUaCGCCgGgGUCUucuggacgagacGGGCgGACCGCCg -3'
miRNA:   3'- gCA-GCGGgCgCAGA------------CCUGgUUGGCGG- -5'
5750 5' -59.8 NC_001806.1 + 63703 0.71 0.493109
Target:  5'- uGUCGCa-GCG-CUGGGCCucuUCGCCg -3'
miRNA:   3'- gCAGCGggCGCaGACCUGGuu-GGCGG- -5'
5750 5' -59.8 NC_001806.1 + 23236 0.71 0.511671
Target:  5'- aCGcCGCCgaCGCG-CUGGcgGCCGccGCCGCCu -3'
miRNA:   3'- -GCaGCGG--GCGCaGACC--UGGU--UGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.