miRNA display CGI


Results 21 - 40 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5751 3' -54.6 NC_001806.1 + 10863 0.71 0.727036
Target:  5'- cGGGCcgcgcCCCGuAGGCCCCGGA-GCUg -3'
miRNA:   3'- cUCCGaa---GGGUuUUCGGGGUCUaCGG- -5'
5751 3' -54.6 NC_001806.1 + 11340 0.71 0.686181
Target:  5'- gGGGGCgucggaagCCCAGccGCCCCAGcgGgCu -3'
miRNA:   3'- -CUCCGaa------GGGUUuuCGGGGUCuaCgG- -5'
5751 3' -54.6 NC_001806.1 + 14472 1.13 0.001832
Target:  5'- cGAGGCUUCCCAAAAGCCCCAGAUGCCa -3'
miRNA:   3'- -CUCCGAAGGGUUUUCGGGGUCUACGG- -5'
5751 3' -54.6 NC_001806.1 + 16185 0.66 0.938948
Target:  5'- cGGGCgUCCCAGuGGgUUCAGgcGCCu -3'
miRNA:   3'- cUCCGaAGGGUUuUCgGGGUCuaCGG- -5'
5751 3' -54.6 NC_001806.1 + 18175 0.69 0.794866
Target:  5'- -cGGUUaccaCCCuuuAGCCCCcGGUGCCa -3'
miRNA:   3'- cuCCGAa---GGGuuuUCGGGGuCUACGG- -5'
5751 3' -54.6 NC_001806.1 + 19387 0.66 0.933975
Target:  5'- gGGGGCUUCauCCu--GGuCCCCAGAcucgGUCg -3'
miRNA:   3'- -CUCCGAAG--GGuuuUC-GGGGUCUa---CGG- -5'
5751 3' -54.6 NC_001806.1 + 19893 0.71 0.727036
Target:  5'- uGGGUUUCUgucguCGGAGGCCCCcgGGGUGCg -3'
miRNA:   3'- cUCCGAAGG-----GUUUUCGGGG--UCUACGg -5'
5751 3' -54.6 NC_001806.1 + 20398 0.69 0.830471
Target:  5'- cGGGCgggaCCGGGGGgCCCGGGgacgGCCa -3'
miRNA:   3'- cUCCGaag-GGUUUUCgGGGUCUa---CGG- -5'
5751 3' -54.6 NC_001806.1 + 21139 0.69 0.804019
Target:  5'- -cGGCUcCCCG--GGCCCCAccGAcggGCCg -3'
miRNA:   3'- cuCCGAaGGGUuuUCGGGGU--CUa--CGG- -5'
5751 3' -54.6 NC_001806.1 + 21847 0.73 0.602805
Target:  5'- cGAGGCcgcgCCCA--AGCCCCGGGcgGCg -3'
miRNA:   3'- -CUCCGaa--GGGUuuUCGGGGUCUa-CGg -5'
5751 3' -54.6 NC_001806.1 + 22167 0.74 0.52079
Target:  5'- cGAGGC--CUCGGgcGCCCCGGcgGCCg -3'
miRNA:   3'- -CUCCGaaGGGUUuuCGGGGUCuaCGG- -5'
5751 3' -54.6 NC_001806.1 + 22569 0.66 0.928753
Target:  5'- gGGGGCcg-CgGGGAGCCCCGGc-GCCg -3'
miRNA:   3'- -CUCCGaagGgUUUUCGGGGUCuaCGG- -5'
5751 3' -54.6 NC_001806.1 + 22893 0.7 0.766524
Target:  5'- cGGGGCccggCCCGccAGCCCCccGcgGCCg -3'
miRNA:   3'- -CUCCGaa--GGGUuuUCGGGGu-CuaCGG- -5'
5751 3' -54.6 NC_001806.1 + 23284 0.69 0.794866
Target:  5'- aGGGGCgcaagCgCAAGAGUCCCGGcccgGCCc -3'
miRNA:   3'- -CUCCGaa---GgGUUUUCGGGGUCua--CGG- -5'
5751 3' -54.6 NC_001806.1 + 26260 0.68 0.838923
Target:  5'- cGGGCagCCCG--GGCCCCccGcgGCCg -3'
miRNA:   3'- cUCCGaaGGGUuuUCGGGGu-CuaCGG- -5'
5751 3' -54.6 NC_001806.1 + 26417 0.68 0.847179
Target:  5'- -cGGCcgCCCG--GGCCCaCGGgcGCCg -3'
miRNA:   3'- cuCCGaaGGGUuuUCGGG-GUCuaCGG- -5'
5751 3' -54.6 NC_001806.1 + 27069 0.71 0.696489
Target:  5'- cGAGGCccgugCCCGGGcccuGGCCCgCGGA-GCCg -3'
miRNA:   3'- -CUCCGaa---GGGUUU----UCGGG-GUCUaCGG- -5'
5751 3' -54.6 NC_001806.1 + 29827 0.66 0.933975
Target:  5'- cGGGGCgUCUCAcgcAGCCCCccAGccgGCCg -3'
miRNA:   3'- -CUCCGaAGGGUuu-UCGGGG--UCua-CGG- -5'
5751 3' -54.6 NC_001806.1 + 32967 0.69 0.794866
Target:  5'- cGGGGCcccuugggUCCgCcGGGGCCCCGGGccggGCCg -3'
miRNA:   3'- -CUCCGa-------AGG-GuUUUCGGGGUCUa---CGG- -5'
5751 3' -54.6 NC_001806.1 + 34267 0.66 0.933975
Target:  5'- gGGGGCUUauaUguGGGGUCCCGGggGCg -3'
miRNA:   3'- -CUCCGAAg--GguUUUCGGGGUCuaCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.