miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5751 3' -54.6 NC_001806.1 + 1617 0.67 0.875904
Target:  5'- -cGGCgcgCCCA--GGCCCCAGcgcgcgcaggcggcGUGCg -3'
miRNA:   3'- cuCCGaa-GGGUuuUCGGGGUC--------------UACGg -5'
5751 3' -54.6 NC_001806.1 + 2098 0.66 0.928753
Target:  5'- -uGGCgagcagcCCCAGAaacuccacGGCCCCGGcgaagGCCa -3'
miRNA:   3'- cuCCGaa-----GGGUUU--------UCGGGGUCua---CGG- -5'
5751 3' -54.6 NC_001806.1 + 2192 0.66 0.938948
Target:  5'- gGGGGCgccggUCCAAuuGCCCgcccaGGcgGCCg -3'
miRNA:   3'- -CUCCGaa---GGGUUuuCGGGg----UCuaCGG- -5'
5751 3' -54.6 NC_001806.1 + 2303 0.66 0.91756
Target:  5'- -cGGCccCCCcGAGGCCCC-GccGCCg -3'
miRNA:   3'- cuCCGaaGGGuUUUCGGGGuCuaCGG- -5'
5751 3' -54.6 NC_001806.1 + 2449 0.67 0.878101
Target:  5'- aGAGGCggccCCCGGcGGCCCCguggGGGUGg- -3'
miRNA:   3'- -CUCCGaa--GGGUUuUCGGGG----UCUACgg -5'
5751 3' -54.6 NC_001806.1 + 2674 0.67 0.892213
Target:  5'- cGGGCgccgCCguGuggcuGGGCCCCGGGggcUGCCg -3'
miRNA:   3'- cUCCGaa--GGguU-----UUCGGGGUCU---ACGG- -5'
5751 3' -54.6 NC_001806.1 + 2816 0.7 0.756814
Target:  5'- gGGGGCgggCUCG--GGCCCCGGggGCg -3'
miRNA:   3'- -CUCCGaa-GGGUuuUCGGGGUCuaCGg -5'
5751 3' -54.6 NC_001806.1 + 3351 0.7 0.735063
Target:  5'- gGGGGCUggcgggccgggcCCCGGccAGCCCCGGGacgGCCg -3'
miRNA:   3'- -CUCCGAa-----------GGGUUu-UCGGGGUCUa--CGG- -5'
5751 3' -54.6 NC_001806.1 + 3678 0.67 0.898915
Target:  5'- cGGGGCUcCCCGc-GGCCCCcGucagcGCCg -3'
miRNA:   3'- -CUCCGAaGGGUuuUCGGGGuCua---CGG- -5'
5751 3' -54.6 NC_001806.1 + 4124 0.77 0.389951
Target:  5'- cGGGCgcccCCCAGAGGCCCgGGcgGCUg -3'
miRNA:   3'- cUCCGaa--GGGUUUUCGGGgUCuaCGG- -5'
5751 3' -54.6 NC_001806.1 + 4722 0.75 0.481387
Target:  5'- cGGGGCcUCCCGuucgcGGCCCCGGGccgggGCCc -3'
miRNA:   3'- -CUCCGaAGGGUuu---UCGGGGUCUa----CGG- -5'
5751 3' -54.6 NC_001806.1 + 5096 0.69 0.813011
Target:  5'- -cGGCggCCCGucgguGGGGCCCgGGGaGCCg -3'
miRNA:   3'- cuCCGaaGGGU-----UUUCGGGgUCUaCGG- -5'
5751 3' -54.6 NC_001806.1 + 5459 0.72 0.633083
Target:  5'- cGGGGCgUCCuCGGGcucauauAGUCCCAGggGCCg -3'
miRNA:   3'- -CUCCGaAGG-GUUU-------UCGGGGUCuaCGG- -5'
5751 3' -54.6 NC_001806.1 + 5894 0.73 0.613234
Target:  5'- cGGGCggCCCAAGGGCCgCCcGccuUGCCg -3'
miRNA:   3'- cUCCGaaGGGUUUUCGG-GGuCu--ACGG- -5'
5751 3' -54.6 NC_001806.1 + 6843 0.68 0.863074
Target:  5'- cGGGCUgcugCCCGAAAucGCCCCcaacgcauccuuGGGUGUg -3'
miRNA:   3'- cUCCGAa---GGGUUUU--CGGGG------------UCUACGg -5'
5751 3' -54.6 NC_001806.1 + 7273 0.71 0.70674
Target:  5'- -cGuGUUcCCCGGGAGCCCCGGGUuCCg -3'
miRNA:   3'- cuC-CGAaGGGUUUUCGGGGUCUAcGG- -5'
5751 3' -54.6 NC_001806.1 + 7390 0.67 0.890844
Target:  5'- -cGGUcUCCCAgGGAGCCCCGGucuccccgggaGCCc -3'
miRNA:   3'- cuCCGaAGGGU-UUUCGGGGUCua---------CGG- -5'
5751 3' -54.6 NC_001806.1 + 7426 0.73 0.613234
Target:  5'- -cGGuCUcCCCGGGAGCCCCGGAccCCa -3'
miRNA:   3'- cuCC-GAaGGGUUUUCGGGGUCUacGG- -5'
5751 3' -54.6 NC_001806.1 + 9080 0.67 0.911591
Target:  5'- -cGGCc-CCCAggccgGAAGCCCCccGGA-GCCa -3'
miRNA:   3'- cuCCGaaGGGU-----UUUCGGGG--UCUaCGG- -5'
5751 3' -54.6 NC_001806.1 + 10402 0.66 0.916975
Target:  5'- gGAGGCgggagCCgGGGGGUCCCgcuggcgGGAgUGCCg -3'
miRNA:   3'- -CUCCGaa---GGgUUUUCGGGG-------UCU-ACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.