miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5751 3' -54.6 NC_001806.1 + 14472 1.13 0.001832
Target:  5'- cGAGGCUUCCCAAAAGCCCCAGAUGCCa -3'
miRNA:   3'- -CUCCGAAGGGUUUUCGGGGUCUACGG- -5'
5751 3' -54.6 NC_001806.1 + 58054 0.82 0.18523
Target:  5'- -uGGCUcgcUCCCAGAGGCCCgGGAgGCCg -3'
miRNA:   3'- cuCCGA---AGGGUUUUCGGGgUCUaCGG- -5'
5751 3' -54.6 NC_001806.1 + 93586 0.81 0.226727
Target:  5'- -cGGCggCCCGGGGGCCCCGGGaccggcauuUGCCg -3'
miRNA:   3'- cuCCGaaGGGUUUUCGGGGUCU---------ACGG- -5'
5751 3' -54.6 NC_001806.1 + 4124 0.77 0.389951
Target:  5'- cGGGCgcccCCCAGAGGCCCgGGcgGCUg -3'
miRNA:   3'- cUCCGaa--GGGUUUUCGGGgUCuaCGG- -5'
5751 3' -54.6 NC_001806.1 + 105143 0.75 0.462233
Target:  5'- gGGGGCggCCguGccGCCCCAGgGUGCCg -3'
miRNA:   3'- -CUCCGaaGGguUuuCGGGGUC-UACGG- -5'
5751 3' -54.6 NC_001806.1 + 106694 0.75 0.47176
Target:  5'- gGGGGCUcuUCCCG--GGCCCCcgGGcgGCCc -3'
miRNA:   3'- -CUCCGA--AGGGUuuUCGGGG--UCuaCGG- -5'
5751 3' -54.6 NC_001806.1 + 4722 0.75 0.481387
Target:  5'- cGGGGCcUCCCGuucgcGGCCCCGGGccgggGCCc -3'
miRNA:   3'- -CUCCGaAGGGUuu---UCGGGGUCUa----CGG- -5'
5751 3' -54.6 NC_001806.1 + 22167 0.74 0.52079
Target:  5'- cGAGGC--CUCGGgcGCCCCGGcgGCCg -3'
miRNA:   3'- -CUCCGaaGGGUUuuCGGGGUCuaCGG- -5'
5751 3' -54.6 NC_001806.1 + 123755 0.74 0.540962
Target:  5'- cGGGGCcUCCgGGc-GCCCCAGcgGCCc -3'
miRNA:   3'- -CUCCGaAGGgUUuuCGGGGUCuaCGG- -5'
5751 3' -54.6 NC_001806.1 + 116566 0.73 0.570653
Target:  5'- aGGGGCaUCCgGGAccugaaccccAGCCCCAGAaaccccggagggcUGCCa -3'
miRNA:   3'- -CUCCGaAGGgUUU----------UCGGGGUCU-------------ACGG- -5'
5751 3' -54.6 NC_001806.1 + 116837 0.73 0.580987
Target:  5'- gGAGGCcgCCCAgcucauucaccccGAAGCCCCGgcccuGAUGCa -3'
miRNA:   3'- -CUCCGaaGGGU-------------UUUCGGGGU-----CUACGg -5'
5751 3' -54.6 NC_001806.1 + 54121 0.73 0.582022
Target:  5'- gGGGGUgUCCCG--GGgCCCAGggGCCg -3'
miRNA:   3'- -CUCCGaAGGGUuuUCgGGGUCuaCGG- -5'
5751 3' -54.6 NC_001806.1 + 21847 0.73 0.602805
Target:  5'- cGAGGCcgcgCCCA--AGCCCCGGGcgGCg -3'
miRNA:   3'- -CUCCGaa--GGGUuuUCGGGGUCUa-CGg -5'
5751 3' -54.6 NC_001806.1 + 114828 0.73 0.602805
Target:  5'- gGAGGCguacUUCCUggGccAGCUCCAGGUGgCCc -3'
miRNA:   3'- -CUCCG----AAGGGuuU--UCGGGGUCUAC-GG- -5'
5751 3' -54.6 NC_001806.1 + 47210 0.73 0.613234
Target:  5'- cGGGggUCCCAAAAacaCCCCGGcgGCCc -3'
miRNA:   3'- cUCCgaAGGGUUUUc--GGGGUCuaCGG- -5'
5751 3' -54.6 NC_001806.1 + 84413 0.73 0.613234
Target:  5'- cGAGGCUgacCCCGAGacgcAGCCCggggaCGGggGCCg -3'
miRNA:   3'- -CUCCGAa--GGGUUU----UCGGG-----GUCuaCGG- -5'
5751 3' -54.6 NC_001806.1 + 7426 0.73 0.613234
Target:  5'- -cGGuCUcCCCGGGAGCCCCGGAccCCa -3'
miRNA:   3'- cuCC-GAaGGGUUUUCGGGGUCUacGG- -5'
5751 3' -54.6 NC_001806.1 + 5894 0.73 0.613234
Target:  5'- cGGGCggCCCAAGGGCCgCCcGccuUGCCg -3'
miRNA:   3'- cUCCGaaGGGUUUUCGG-GGuCu--ACGG- -5'
5751 3' -54.6 NC_001806.1 + 68468 0.72 0.623678
Target:  5'- -uGGCUcUCCCcGAGGCCCCcGAccagGCCu -3'
miRNA:   3'- cuCCGA-AGGGuUUUCGGGGuCUa---CGG- -5'
5751 3' -54.6 NC_001806.1 + 5459 0.72 0.633083
Target:  5'- cGGGGCgUCCuCGGGcucauauAGUCCCAGggGCCg -3'
miRNA:   3'- -CUCCGaAGG-GUUU-------UCGGGGUCuaCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.