Results 1 - 20 of 112 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5751 | 3' | -54.6 | NC_001806.1 | + | 120856 | 0.66 | 0.923281 |
Target: 5'- uGGGac-CCCGGcGGCCCCuGgcGCCg -3' miRNA: 3'- cUCCgaaGGGUUuUCGGGGuCuaCGG- -5' |
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5751 | 3' | -54.6 | NC_001806.1 | + | 34267 | 0.66 | 0.933975 |
Target: 5'- gGGGGCUUauaUguGGGGUCCCGGggGCg -3' miRNA: 3'- -CUCCGAAg--GguUUUCGGGGUCuaCGg -5' |
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5751 | 3' | -54.6 | NC_001806.1 | + | 80274 | 0.66 | 0.933464 |
Target: 5'- -cGGUUUCCCGcc-GCCCCAcuacacggcagccGGUGgCCa -3' miRNA: 3'- cuCCGAAGGGUuuuCGGGGU-------------CUAC-GG- -5' |
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5751 | 3' | -54.6 | NC_001806.1 | + | 45376 | 0.66 | 0.93295 |
Target: 5'- -uGGCcaaaugucugcCCCGGGGGCCCU-GGUGCCc -3' miRNA: 3'- cuCCGaa---------GGGUUUUCGGGGuCUACGG- -5' |
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5751 | 3' | -54.6 | NC_001806.1 | + | 22569 | 0.66 | 0.928753 |
Target: 5'- gGGGGCcg-CgGGGAGCCCCGGc-GCCg -3' miRNA: 3'- -CUCCGaagGgUUUUCGGGGUCuaCGG- -5' |
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5751 | 3' | -54.6 | NC_001806.1 | + | 2098 | 0.66 | 0.928753 |
Target: 5'- -uGGCgagcagcCCCAGAaacuccacGGCCCCGGcgaagGCCa -3' miRNA: 3'- cuCCGaa-----GGGUUU--------UCGGGGUCua---CGG- -5' |
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5751 | 3' | -54.6 | NC_001806.1 | + | 127954 | 0.66 | 0.923281 |
Target: 5'- aGGGCgacgcggacUCCCGucuGAGCCCCcg--GCCa -3' miRNA: 3'- cUCCGa--------AGGGUu--UUCGGGGucuaCGG- -5' |
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5751 | 3' | -54.6 | NC_001806.1 | + | 92410 | 0.66 | 0.923281 |
Target: 5'- uGGGGUUUCCCAAgGAGCUgCgcgucaAGA-GCCg -3' miRNA: 3'- -CUCCGAAGGGUU-UUCGGgG------UCUaCGG- -5' |
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5751 | 3' | -54.6 | NC_001806.1 | + | 52457 | 0.66 | 0.923281 |
Target: 5'- cGGGGCcgCCCu--GGCCgCGGAucUGCUc -3' miRNA: 3'- -CUCCGaaGGGuuuUCGGgGUCU--ACGG- -5' |
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5751 | 3' | -54.6 | NC_001806.1 | + | 119514 | 0.66 | 0.933975 |
Target: 5'- cGGGGCUaCgCCAGGGcGCCCUGGuucaccagGCCg -3' miRNA: 3'- -CUCCGAaG-GGUUUU-CGGGGUCua------CGG- -5' |
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5751 | 3' | -54.6 | NC_001806.1 | + | 144999 | 0.66 | 0.933975 |
Target: 5'- aGGGGCcccggCCC-GGGGCCCCAcaacgGCCc -3' miRNA: 3'- -CUCCGaa---GGGuUUUCGGGGUcua--CGG- -5' |
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5751 | 3' | -54.6 | NC_001806.1 | + | 19387 | 0.66 | 0.933975 |
Target: 5'- gGGGGCUUCauCCu--GGuCCCCAGAcucgGUCg -3' miRNA: 3'- -CUCCGAAG--GGuuuUC-GGGGUCUa---CGG- -5' |
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5751 | 3' | -54.6 | NC_001806.1 | + | 87430 | 0.66 | 0.938948 |
Target: 5'- -cGGCgccCCUAAAucGCCCCuGGGUGUCc -3' miRNA: 3'- cuCCGaa-GGGUUUu-CGGGG-UCUACGG- -5' |
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5751 | 3' | -54.6 | NC_001806.1 | + | 80008 | 0.66 | 0.938948 |
Target: 5'- cAGGgUUCCCGuaggcGGGCCgCAGcgGCg -3' miRNA: 3'- cUCCgAAGGGUu----UUCGGgGUCuaCGg -5' |
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5751 | 3' | -54.6 | NC_001806.1 | + | 2192 | 0.66 | 0.938948 |
Target: 5'- gGGGGCgccggUCCAAuuGCCCgcccaGGcgGCCg -3' miRNA: 3'- -CUCCGaa---GGGUUuuCGGGg----UCuaCGG- -5' |
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5751 | 3' | -54.6 | NC_001806.1 | + | 144566 | 0.66 | 0.938948 |
Target: 5'- aAGaCUUUCCGGgcGCgUCCGGGUGCCg -3' miRNA: 3'- cUCcGAAGGGUUuuCG-GGGUCUACGG- -5' |
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5751 | 3' | -54.6 | NC_001806.1 | + | 79725 | 0.66 | 0.938948 |
Target: 5'- cAGGCUUCCgCGAcca-CCCAGGguuggcgGCCg -3' miRNA: 3'- cUCCGAAGG-GUUuucgGGGUCUa------CGG- -5' |
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5751 | 3' | -54.6 | NC_001806.1 | + | 16185 | 0.66 | 0.938948 |
Target: 5'- cGGGCgUCCCAGuGGgUUCAGgcGCCu -3' miRNA: 3'- cUCCGaAGGGUUuUCgGGGUCuaCGG- -5' |
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5751 | 3' | -54.6 | NC_001806.1 | + | 70163 | 0.66 | 0.938462 |
Target: 5'- cGGGGCggCCUc--GGCCCCacuaugcAGAUGgCCg -3' miRNA: 3'- -CUCCGaaGGGuuuUCGGGG-------UCUAC-GG- -5' |
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5751 | 3' | -54.6 | NC_001806.1 | + | 29827 | 0.66 | 0.933975 |
Target: 5'- cGGGGCgUCUCAcgcAGCCCCccAGccgGCCg -3' miRNA: 3'- -CUCCGaAGGGUuu-UCGGGG--UCua-CGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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