Results 1 - 20 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5751 | 5' | -52.9 | NC_001806.1 | + | 126885 | 0.66 | 0.976608 |
Target: 5'- cGGGGCucUCGgGGC-CGCAGGAC-CCAg -3' miRNA: 3'- -CUCUGu-AGCgCUGuGUGUCUUGcGGU- -5' |
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5751 | 5' | -52.9 | NC_001806.1 | + | 33374 | 0.66 | 0.968182 |
Target: 5'- gGAGAgc-CGCGGCACcCGGAcGCGCCc -3' miRNA: 3'- -CUCUguaGCGCUGUGuGUCU-UGCGGu -5' |
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5751 | 5' | -52.9 | NC_001806.1 | + | 68327 | 0.66 | 0.970907 |
Target: 5'- cGGcCAUCGCcccggcaGACGCGCGGGACuGCUg -3' miRNA: 3'- cUCuGUAGCG-------CUGUGUGUCUUG-CGGu -5' |
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5751 | 5' | -52.9 | NC_001806.1 | + | 7864 | 0.66 | 0.971199 |
Target: 5'- aGAGACGUCGCcccuGugGCccugGCGGAcgGCgGCCAu -3' miRNA: 3'- -CUCUGUAGCG----CugUG----UGUCU--UG-CGGU- -5' |
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5751 | 5' | -52.9 | NC_001806.1 | + | 6125 | 0.66 | 0.971199 |
Target: 5'- aAGGCccggCGCGACcgacgccCGCAGAcgGCGCCGg -3' miRNA: 3'- cUCUGua--GCGCUGu------GUGUCU--UGCGGU- -5' |
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5751 | 5' | -52.9 | NC_001806.1 | + | 111525 | 0.66 | 0.971199 |
Target: 5'- uGGGcCGUCGgGcACguACACGGGugGCCGg -3' miRNA: 3'- -CUCuGUAGCgC-UG--UGUGUCUugCGGU- -5' |
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5751 | 5' | -52.9 | NC_001806.1 | + | 4316 | 0.66 | 0.973734 |
Target: 5'- -uGGCGUCGCGGCcggccaccgccGCGCGGGcccggcgGCGCUc -3' miRNA: 3'- cuCUGUAGCGCUG-----------UGUGUCU-------UGCGGu -5' |
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5751 | 5' | -52.9 | NC_001806.1 | + | 12132 | 0.66 | 0.974006 |
Target: 5'- cGGuCG-CGCGACACAgGgcGAAUGCCAc -3' miRNA: 3'- cUCuGUaGCGCUGUGUgU--CUUGCGGU- -5' |
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5751 | 5' | -52.9 | NC_001806.1 | + | 22140 | 0.66 | 0.974006 |
Target: 5'- cGAGGCGgaggaggCGCGACGC-CGGuucgaggccucgGGCGCCc -3' miRNA: 3'- -CUCUGUa------GCGCUGUGuGUC------------UUGCGGu -5' |
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5751 | 5' | -52.9 | NC_001806.1 | + | 29774 | 0.66 | 0.974006 |
Target: 5'- cGGACGcccCGCGccccccCACGCAGAgGCGCCGc -3' miRNA: 3'- cUCUGUa--GCGCu-----GUGUGUCU-UGCGGU- -5' |
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5751 | 5' | -52.9 | NC_001806.1 | + | 50894 | 0.66 | 0.974006 |
Target: 5'- cGGACuccgCGCGGC-CGCGGAgcacguggaucuGCGCCc -3' miRNA: 3'- cUCUGua--GCGCUGuGUGUCU------------UGCGGu -5' |
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5751 | 5' | -52.9 | NC_001806.1 | + | 71279 | 0.66 | 0.976608 |
Target: 5'- uGGAgGUcCGCGACGC-CGGAaacagucuccccGCGCCu -3' miRNA: 3'- cUCUgUA-GCGCUGUGuGUCU------------UGCGGu -5' |
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5751 | 5' | -52.9 | NC_001806.1 | + | 1497 | 0.66 | 0.976608 |
Target: 5'- gGGGGCGUCGUcgucgGGCuccaGCAGGGCGCgGg -3' miRNA: 3'- -CUCUGUAGCG-----CUGug--UGUCUUGCGgU- -5' |
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5751 | 5' | -52.9 | NC_001806.1 | + | 31955 | 0.67 | 0.945303 |
Target: 5'- gGAGGgGUgGCGGgGCgggACGGGGCGCCc -3' miRNA: 3'- -CUCUgUAgCGCUgUG---UGUCUUGCGGu -5' |
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5751 | 5' | -52.9 | NC_001806.1 | + | 50674 | 0.67 | 0.945303 |
Target: 5'- cGGGACGaCGCGGCGgcCACGc-GCGCCAu -3' miRNA: 3'- -CUCUGUaGCGCUGU--GUGUcuUGCGGU- -5' |
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5751 | 5' | -52.9 | NC_001806.1 | + | 151148 | 0.67 | 0.945303 |
Target: 5'- --cGCGUCGC-AgGCGCAGGcGCGCCAg -3' miRNA: 3'- cucUGUAGCGcUgUGUGUCU-UGCGGU- -5' |
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5751 | 5' | -52.9 | NC_001806.1 | + | 43294 | 0.67 | 0.949709 |
Target: 5'- gGAGGCGgagcCGCGGC-UGCAGGAgGCCc -3' miRNA: 3'- -CUCUGUa---GCGCUGuGUGUCUUgCGGu -5' |
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5751 | 5' | -52.9 | NC_001806.1 | + | 132172 | 0.67 | 0.953873 |
Target: 5'- -cGACG-CGCGGCugGCGuGGGCGCg- -3' miRNA: 3'- cuCUGUaGCGCUGugUGU-CUUGCGgu -5' |
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5751 | 5' | -52.9 | NC_001806.1 | + | 135136 | 0.67 | 0.961486 |
Target: 5'- uGGACGUcCGCGACGaACAGGGcCGCg- -3' miRNA: 3'- cUCUGUA-GCGCUGUgUGUCUU-GCGgu -5' |
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5751 | 5' | -52.9 | NC_001806.1 | + | 115034 | 0.68 | 0.935751 |
Target: 5'- uGGACAaCGCGGCAgccguguaccUGCGGAACGCg- -3' miRNA: 3'- cUCUGUaGCGCUGU----------GUGUCUUGCGgu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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