miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5751 5' -52.9 NC_001806.1 + 14510 1.09 0.005339
Target:  5'- aGAGACAUCGCGACACACAGAACGCCAa -3'
miRNA:   3'- -CUCUGUAGCGCUGUGUGUCUUGCGGU- -5'
5751 5' -52.9 NC_001806.1 + 140128 0.82 0.290332
Target:  5'- gGAGACGccaggCGCGGCACACGGGguggGCGCCGc -3'
miRNA:   3'- -CUCUGUa----GCGCUGUGUGUCU----UGCGGU- -5'
5751 5' -52.9 NC_001806.1 + 10096 0.79 0.374495
Target:  5'- cGAGACGuccacguacUCGCGGCGCACGGcGCGUCGg -3'
miRNA:   3'- -CUCUGU---------AGCGCUGUGUGUCuUGCGGU- -5'
5751 5' -52.9 NC_001806.1 + 78258 0.76 0.522972
Target:  5'- -cGGCA-CGCGGCugGCAGAcugGCGCCGc -3'
miRNA:   3'- cuCUGUaGCGCUGugUGUCU---UGCGGU- -5'
5751 5' -52.9 NC_001806.1 + 67537 0.76 0.533068
Target:  5'- cGAGAgAUCGgGGgGCGCAGGacGCGCCGa -3'
miRNA:   3'- -CUCUgUAGCgCUgUGUGUCU--UGCGGU- -5'
5751 5' -52.9 NC_001806.1 + 94302 0.74 0.65768
Target:  5'- gGAGACGuUCGCGAC-CGCGGGagACGUCGc -3'
miRNA:   3'- -CUCUGU-AGCGCUGuGUGUCU--UGCGGU- -5'
5751 5' -52.9 NC_001806.1 + 148010 0.73 0.688909
Target:  5'- -cGGC-UCGCGACugGCGGGAgcCGCCGc -3'
miRNA:   3'- cuCUGuAGCGCUGugUGUCUU--GCGGU- -5'
5751 5' -52.9 NC_001806.1 + 20865 0.73 0.698203
Target:  5'- aGAGACAgaccgucagacgcUCGCcGCGC-CGGGACGCCGa -3'
miRNA:   3'- -CUCUGU-------------AGCGcUGUGuGUCUUGCGGU- -5'
5751 5' -52.9 NC_001806.1 + 20009 0.73 0.72981
Target:  5'- cGGGGCGUCGCGAUGC-CG--ACGCCGu -3'
miRNA:   3'- -CUCUGUAGCGCUGUGuGUcuUGCGGU- -5'
5751 5' -52.9 NC_001806.1 + 50526 0.72 0.739838
Target:  5'- cGAGGCGcuggGCGACAcCGCAGcGCGCCGg -3'
miRNA:   3'- -CUCUGUag--CGCUGU-GUGUCuUGCGGU- -5'
5751 5' -52.9 NC_001806.1 + 108748 0.72 0.759589
Target:  5'- cGAGACGUUGCGauucuauaaaGCGCAgCAGAGCGUg- -3'
miRNA:   3'- -CUCUGUAGCGC----------UGUGU-GUCUUGCGgu -5'
5751 5' -52.9 NC_001806.1 + 116118 0.71 0.797593
Target:  5'- -uGACAUCGCGAUACccuCGGGcaucucGCGCCc -3'
miRNA:   3'- cuCUGUAGCGCUGUGu--GUCU------UGCGGu -5'
5751 5' -52.9 NC_001806.1 + 74255 0.71 0.797593
Target:  5'- cGGGACAUCGCGcaGCGCGC----CGCCAu -3'
miRNA:   3'- -CUCUGUAGCGC--UGUGUGucuuGCGGU- -5'
5751 5' -52.9 NC_001806.1 + 118990 0.71 0.806726
Target:  5'- -cGugGUgUGUGACGCGCAGGGCGUCu -3'
miRNA:   3'- cuCugUA-GCGCUGUGUGUCUUGCGGu -5'
5751 5' -52.9 NC_001806.1 + 51136 0.7 0.849727
Target:  5'- gGAGGCG-CGCGACcggGCugGGAGgccCGCCAc -3'
miRNA:   3'- -CUCUGUaGCGCUG---UGugUCUU---GCGGU- -5'
5751 5' -52.9 NC_001806.1 + 34314 0.7 0.865533
Target:  5'- gGGGGCggCGCGcCGgACGGGGCGCUg -3'
miRNA:   3'- -CUCUGuaGCGCuGUgUGUCUUGCGGu -5'
5751 5' -52.9 NC_001806.1 + 113867 0.7 0.865533
Target:  5'- -cGcCAUCGCGACugccggguuaGCGCGGGGgGCCAc -3'
miRNA:   3'- cuCuGUAGCGCUG----------UGUGUCUUgCGGU- -5'
5751 5' -52.9 NC_001806.1 + 47726 0.69 0.887577
Target:  5'- cGGACGcgaUCGCGAC-CugGGAgaaaugcugcGCGCCAc -3'
miRNA:   3'- cUCUGU---AGCGCUGuGugUCU----------UGCGGU- -5'
5751 5' -52.9 NC_001806.1 + 2743 0.69 0.894458
Target:  5'- cGGGCcggCGCGACACggccACGGGGCGCgGg -3'
miRNA:   3'- cUCUGua-GCGCUGUG----UGUCUUGCGgU- -5'
5751 5' -52.9 NC_001806.1 + 3547 0.69 0.894458
Target:  5'- gGAGGCGggCGCGGCGgACAGc-CGCCc -3'
miRNA:   3'- -CUCUGUa-GCGCUGUgUGUCuuGCGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.