miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5752 5' -54 NC_001806.1 + 13560 1.08 0.004541
Target:  5'- aGGCGCGCUCCAACACGGCGUAGUAAAc -3'
miRNA:   3'- -CCGCGCGAGGUUGUGCCGCAUCAUUU- -5'
5752 5' -54 NC_001806.1 + 151470 0.74 0.606974
Target:  5'- gGGCGCGCUCCugaccgcggguuccgAGUugGGCGUGGa--- -3'
miRNA:   3'- -CCGCGCGAGG---------------UUGugCCGCAUCauuu -5'
5752 5' -54 NC_001806.1 + 141429 0.73 0.655016
Target:  5'- cGGCGCGCggCCAAC-CGGCGg------ -3'
miRNA:   3'- -CCGCGCGa-GGUUGuGCCGCaucauuu -5'
5752 5' -54 NC_001806.1 + 68291 0.72 0.665436
Target:  5'- uGCGCGCcgCCAugGCGGCGUuucuGUu-- -3'
miRNA:   3'- cCGCGCGa-GGUugUGCCGCAu---CAuuu -5'
5752 5' -54 NC_001806.1 + 88139 0.72 0.686181
Target:  5'- aGGaCGUGCUCCAGgGCGGU--GGUGGAc -3'
miRNA:   3'- -CC-GCGCGAGGUUgUGCCGcaUCAUUU- -5'
5752 5' -54 NC_001806.1 + 147751 0.71 0.74699
Target:  5'- gGGCGCGCgggucCCGACGCGGcCGcGGa--- -3'
miRNA:   3'- -CCGCGCGa----GGUUGUGCC-GCaUCauuu -5'
5752 5' -54 NC_001806.1 + 84864 0.71 0.753878
Target:  5'- cGGuCGCGCUCCucugcggccggcggGAcuCugGGCGUGGUGc- -3'
miRNA:   3'- -CC-GCGCGAGG--------------UU--GugCCGCAUCAUuu -5'
5752 5' -54 NC_001806.1 + 87660 0.71 0.756814
Target:  5'- uGCGCGggCCcg-GCGGCGUAGUAGg -3'
miRNA:   3'- cCGCGCgaGGuugUGCCGCAUCAUUu -5'
5752 5' -54 NC_001806.1 + 1617 0.71 0.770373
Target:  5'- cGGCGCGC-CCAggccccagcgcgcgcAgGCGGCGUgcgAGUGGg -3'
miRNA:   3'- -CCGCGCGaGGU---------------UgUGCCGCA---UCAUUu -5'
5752 5' -54 NC_001806.1 + 132150 0.7 0.785559
Target:  5'- cGGCGCGCguugCCGagcaucccgacGCGCGGCuGgcGUGGg -3'
miRNA:   3'- -CCGCGCGa---GGU-----------UGUGCCG-CauCAUUu -5'
5752 5' -54 NC_001806.1 + 1499 0.7 0.785559
Target:  5'- gGGCGUcgucgucggGCUCCAGCAgGGCGcGGg--- -3'
miRNA:   3'- -CCGCG---------CGAGGUUGUgCCGCaUCauuu -5'
5752 5' -54 NC_001806.1 + 30216 0.7 0.785559
Target:  5'- cGCGCGCcCCcGCGCGGcCGUGGc--- -3'
miRNA:   3'- cCGCGCGaGGuUGUGCC-GCAUCauuu -5'
5752 5' -54 NC_001806.1 + 3616 0.7 0.785559
Target:  5'- cGCGCGCUcgcCCggUGCGGCGgcGgcGAc -3'
miRNA:   3'- cCGCGCGA---GGuuGUGCCGCauCauUU- -5'
5752 5' -54 NC_001806.1 + 51424 0.7 0.794866
Target:  5'- cGGCaGCGCUCCGACGacgcgcagcCGGCGUu----- -3'
miRNA:   3'- -CCG-CGCGAGGUUGU---------GCCGCAucauuu -5'
5752 5' -54 NC_001806.1 + 20192 0.7 0.813011
Target:  5'- cGGCGCGgagUCgGGCACGGCGccAGUGc- -3'
miRNA:   3'- -CCGCGCg--AGgUUGUGCCGCa-UCAUuu -5'
5752 5' -54 NC_001806.1 + 1680 0.7 0.813011
Target:  5'- cGGCGCGC-CgGGCGCcauGGCGUcGGUGGu -3'
miRNA:   3'- -CCGCGCGaGgUUGUG---CCGCA-UCAUUu -5'
5752 5' -54 NC_001806.1 + 2635 0.7 0.81656
Target:  5'- cGGCGCGCggggagcaguaggccUCCAGgGCGGCGg------ -3'
miRNA:   3'- -CCGCGCG---------------AGGUUgUGCCGCaucauuu -5'
5752 5' -54 NC_001806.1 + 57167 0.7 0.821831
Target:  5'- gGGUGCGCgcauaaagcCCAGCACGGCGc------ -3'
miRNA:   3'- -CCGCGCGa--------GGUUGUGCCGCaucauuu -5'
5752 5' -54 NC_001806.1 + 99977 0.7 0.821831
Target:  5'- cGGCGCGcCUCgAGCcucccCGGgGUAGUAc- -3'
miRNA:   3'- -CCGCGC-GAGgUUGu----GCCgCAUCAUuu -5'
5752 5' -54 NC_001806.1 + 110331 0.7 0.821831
Target:  5'- gGGCGUGUUcCCGACACGGCcuacUGGg--- -3'
miRNA:   3'- -CCGCGCGA-GGUUGUGCCGc---AUCauuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.