miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5752 5' -54 NC_001806.1 + 1499 0.7 0.785559
Target:  5'- gGGCGUcgucgucggGCUCCAGCAgGGCGcGGg--- -3'
miRNA:   3'- -CCGCG---------CGAGGUUGUgCCGCaUCauuu -5'
5752 5' -54 NC_001806.1 + 1617 0.71 0.770373
Target:  5'- cGGCGCGC-CCAggccccagcgcgcgcAgGCGGCGUgcgAGUGGg -3'
miRNA:   3'- -CCGCGCGaGGU---------------UgUGCCGCA---UCAUUu -5'
5752 5' -54 NC_001806.1 + 1680 0.7 0.813011
Target:  5'- cGGCGCGC-CgGGCGCcauGGCGUcGGUGGu -3'
miRNA:   3'- -CCGCGCGaGgUUGUG---CCGCA-UCAUUu -5'
5752 5' -54 NC_001806.1 + 2635 0.7 0.81656
Target:  5'- cGGCGCGCggggagcaguaggccUCCAGgGCGGCGg------ -3'
miRNA:   3'- -CCGCGCG---------------AGGUUgUGCCGCaucauuu -5'
5752 5' -54 NC_001806.1 + 2818 0.67 0.91756
Target:  5'- gGGCGgGCUCgGGCcccgGgGGCGUGGa--- -3'
miRNA:   3'- -CCGCgCGAGgUUG----UgCCGCAUCauuu -5'
5752 5' -54 NC_001806.1 + 3616 0.7 0.785559
Target:  5'- cGCGCGCUcgcCCggUGCGGCGgcGgcGAc -3'
miRNA:   3'- cCGCGCGA---GGuuGUGCCGCauCauUU- -5'
5752 5' -54 NC_001806.1 + 3727 0.66 0.943675
Target:  5'- gGGCGCGUa--GGCGCGGCGcAGg--- -3'
miRNA:   3'- -CCGCGCGaggUUGUGCCGCaUCauuu -5'
5752 5' -54 NC_001806.1 + 11366 0.69 0.838923
Target:  5'- aGCGgGCUCCGACucuuCGGCGaUGGc--- -3'
miRNA:   3'- cCGCgCGAGGUUGu---GCCGC-AUCauuu -5'
5752 5' -54 NC_001806.1 + 13560 1.08 0.004541
Target:  5'- aGGCGCGCUCCAACACGGCGUAGUAAAc -3'
miRNA:   3'- -CCGCGCGAGGUUGUGCCGCAUCAUUU- -5'
5752 5' -54 NC_001806.1 + 15922 0.68 0.870699
Target:  5'- --gGCGCUCCAAaugucgACGGuCGUGGUAu- -3'
miRNA:   3'- ccgCGCGAGGUUg-----UGCC-GCAUCAUuu -5'
5752 5' -54 NC_001806.1 + 20192 0.7 0.813011
Target:  5'- cGGCGCGgagUCgGGCACGGCGccAGUGc- -3'
miRNA:   3'- -CCGCGCg--AGgUUGUGCCGCa-UCAUuu -5'
5752 5' -54 NC_001806.1 + 21309 0.67 0.933975
Target:  5'- cGGCGgGCaCCGACGcCGGCGaGGa--- -3'
miRNA:   3'- -CCGCgCGaGGUUGU-GCCGCaUCauuu -5'
5752 5' -54 NC_001806.1 + 22544 0.66 0.938948
Target:  5'- uGGCGCGCgagAACGCGGCGc------ -3'
miRNA:   3'- -CCGCGCGaggUUGUGCCGCaucauuu -5'
5752 5' -54 NC_001806.1 + 24684 0.69 0.838923
Target:  5'- cGGUGCGCgCCGGCcCGGCccGGUGGc -3'
miRNA:   3'- -CCGCGCGaGGUUGuGCCGcaUCAUUu -5'
5752 5' -54 NC_001806.1 + 25923 0.67 0.905375
Target:  5'- cGGCGUGCgcgcGCGCGGCGggcGUGGGg -3'
miRNA:   3'- -CCGCGCGagguUGUGCCGCau-CAUUU- -5'
5752 5' -54 NC_001806.1 + 27280 0.69 0.847179
Target:  5'- cGGCG-GCcgCCAGCGCGGCGgGGc--- -3'
miRNA:   3'- -CCGCgCGa-GGUUGUGCCGCaUCauuu -5'
5752 5' -54 NC_001806.1 + 30216 0.7 0.785559
Target:  5'- cGCGCGCcCCcGCGCGGcCGUGGc--- -3'
miRNA:   3'- cCGCGCGaGGuUGUGCC-GCAUCauuu -5'
5752 5' -54 NC_001806.1 + 34319 0.68 0.870699
Target:  5'- cGGCGCGC-CgGACGgGGCGcUGGa--- -3'
miRNA:   3'- -CCGCGCGaGgUUGUgCCGC-AUCauuu -5'
5752 5' -54 NC_001806.1 + 35560 0.66 0.948155
Target:  5'- cGGCGCGC-CCGGCGCcGCGc------ -3'
miRNA:   3'- -CCGCGCGaGGUUGUGcCGCaucauuu -5'
5752 5' -54 NC_001806.1 + 51424 0.7 0.794866
Target:  5'- cGGCaGCGCUCCGACGacgcgcagcCGGCGUu----- -3'
miRNA:   3'- -CCG-CGCGAGGUUGU---------GCCGCAucauuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.