Results 1 - 20 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5752 | 5' | -54 | NC_001806.1 | + | 151470 | 0.74 | 0.606974 |
Target: 5'- gGGCGCGCUCCugaccgcggguuccgAGUugGGCGUGGa--- -3' miRNA: 3'- -CCGCGCGAGG---------------UUGugCCGCAUCauuu -5' |
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5752 | 5' | -54 | NC_001806.1 | + | 147751 | 0.71 | 0.74699 |
Target: 5'- gGGCGCGCgggucCCGACGCGGcCGcGGa--- -3' miRNA: 3'- -CCGCGCGa----GGUUGUGCC-GCaUCauuu -5' |
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5752 | 5' | -54 | NC_001806.1 | + | 147647 | 0.66 | 0.943675 |
Target: 5'- cGGCGCGCgUCCG-CGgGGCGg------ -3' miRNA: 3'- -CCGCGCG-AGGUuGUgCCGCaucauuu -5' |
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5752 | 5' | -54 | NC_001806.1 | + | 142168 | 0.69 | 0.858395 |
Target: 5'- gGGUGgGgUCCGacguggcgaugauggGCgGCGGCGUGGUGAGg -3' miRNA: 3'- -CCGCgCgAGGU---------------UG-UGCCGCAUCAUUU- -5' |
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5752 | 5' | -54 | NC_001806.1 | + | 141676 | 0.67 | 0.923281 |
Target: 5'- cGUGCGC-CUGGC-CGGgGUGGUGAu -3' miRNA: 3'- cCGCGCGaGGUUGuGCCgCAUCAUUu -5' |
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5752 | 5' | -54 | NC_001806.1 | + | 141429 | 0.73 | 0.655016 |
Target: 5'- cGGCGCGCggCCAAC-CGGCGg------ -3' miRNA: 3'- -CCGCGCGa-GGUUGuGCCGCaucauuu -5' |
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5752 | 5' | -54 | NC_001806.1 | + | 137755 | 0.67 | 0.91756 |
Target: 5'- gGGCGUcacCUCCu-CACGGcCGUGGUGu- -3' miRNA: 3'- -CCGCGc--GAGGuuGUGCC-GCAUCAUuu -5' |
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5752 | 5' | -54 | NC_001806.1 | + | 136372 | 0.66 | 0.938948 |
Target: 5'- cGGCGCGCUCC---GCGGCcuccgcgaccGUGGc--- -3' miRNA: 3'- -CCGCGCGAGGuugUGCCG----------CAUCauuu -5' |
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5752 | 5' | -54 | NC_001806.1 | + | 135406 | 0.67 | 0.92272 |
Target: 5'- aGGCgcgacagGCGCUCCAGgucCugGGCGUAc---- -3' miRNA: 3'- -CCG-------CGCGAGGUU---GugCCGCAUcauuu -5' |
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5752 | 5' | -54 | NC_001806.1 | + | 134792 | 0.67 | 0.923281 |
Target: 5'- aGGCGCGacgUCGACGCGcGCGaugcUGGUGGc -3' miRNA: 3'- -CCGCGCga-GGUUGUGC-CGC----AUCAUUu -5' |
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5752 | 5' | -54 | NC_001806.1 | + | 132150 | 0.7 | 0.785559 |
Target: 5'- cGGCGCGCguugCCGagcaucccgacGCGCGGCuGgcGUGGg -3' miRNA: 3'- -CCGCGCGa---GGU-----------UGUGCCG-CauCAUUu -5' |
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5752 | 5' | -54 | NC_001806.1 | + | 131265 | 0.68 | 0.892213 |
Target: 5'- cGCGCGCUUCAagcuACGCGugcccGCGUGGg--- -3' miRNA: 3'- cCGCGCGAGGU----UGUGC-----CGCAUCauuu -5' |
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5752 | 5' | -54 | NC_001806.1 | + | 128554 | 0.67 | 0.911591 |
Target: 5'- cGGCcCGCgUCCAggGCGCGGuCGUAGcgGGAg -3' miRNA: 3'- -CCGcGCG-AGGU--UGUGCC-GCAUCa-UUU- -5' |
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5752 | 5' | -54 | NC_001806.1 | + | 116156 | 0.66 | 0.938462 |
Target: 5'- cGGCgGCGCUgCAGCGCugcgaagGGCGggUGGUAu- -3' miRNA: 3'- -CCG-CGCGAgGUUGUG-------CCGC--AUCAUuu -5' |
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5752 | 5' | -54 | NC_001806.1 | + | 110331 | 0.7 | 0.821831 |
Target: 5'- gGGCGUGUUcCCGACACGGCcuacUGGg--- -3' miRNA: 3'- -CCGCGCGA-GGUUGUGCCGc---AUCauuu -5' |
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5752 | 5' | -54 | NC_001806.1 | + | 101069 | 0.66 | 0.943675 |
Target: 5'- aGGaCGCGCUCCAgcugcACGCaGGCGa------ -3' miRNA: 3'- -CC-GCGCGAGGU-----UGUG-CCGCaucauuu -5' |
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5752 | 5' | -54 | NC_001806.1 | + | 99977 | 0.7 | 0.821831 |
Target: 5'- cGGCGCGcCUCgAGCcucccCGGgGUAGUAc- -3' miRNA: 3'- -CCGCGC-GAGgUUGu----GCCgCAUCAUuu -5' |
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5752 | 5' | -54 | NC_001806.1 | + | 98605 | 0.67 | 0.935493 |
Target: 5'- gGGCGCGCggUCGgcaagguggugauggGCaucguggGCGGCGUGGUAu- -3' miRNA: 3'- -CCGCGCGa-GGU---------------UG-------UGCCGCAUCAUuu -5' |
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5752 | 5' | -54 | NC_001806.1 | + | 97494 | 0.67 | 0.911591 |
Target: 5'- uGCuGCGCUCCGAgUACGGCGg------ -3' miRNA: 3'- cCG-CGCGAGGUU-GUGCCGCaucauuu -5' |
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5752 | 5' | -54 | NC_001806.1 | + | 88139 | 0.72 | 0.686181 |
Target: 5'- aGGaCGUGCUCCAGgGCGGU--GGUGGAc -3' miRNA: 3'- -CC-GCGCGAGGUUgUGCCGcaUCAUUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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