miRNA display CGI


Results 41 - 60 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5753 3' -59.3 NC_001806.1 + 21280 0.68 0.646151
Target:  5'- cGACGcccGGCGGGACGGGaGgGC--CCCCg -3'
miRNA:   3'- -CUGU---CCGCCUUGUCCaCgCGcaGGGG- -5'
5753 3' -59.3 NC_001806.1 + 84880 0.68 0.646151
Target:  5'- cGGCcGGCGGGACucuGGgcgugGUGCGUCgggccuCCCg -3'
miRNA:   3'- -CUGuCCGCCUUGu--CCa----CGCGCAG------GGG- -5'
5753 3' -59.3 NC_001806.1 + 49498 0.68 0.646151
Target:  5'- --gGGGCGGGucggcgguucGCGGGUgGCGCcGUCgCCg -3'
miRNA:   3'- cugUCCGCCU----------UGUCCA-CGCG-CAGgGG- -5'
5753 3' -59.3 NC_001806.1 + 2804 0.68 0.636173
Target:  5'- cGCGGGCuGGGCGGGgGCGgGcucgggCCCCg -3'
miRNA:   3'- cUGUCCGcCUUGUCCaCGCgCa-----GGGG- -5'
5753 3' -59.3 NC_001806.1 + 45517 0.68 0.636173
Target:  5'- uGAgGGGUGGGGguGGaGgGUGUCCCa -3'
miRNA:   3'- -CUgUCCGCCUUguCCaCgCGCAGGGg -5'
5753 3' -59.3 NC_001806.1 + 133706 0.68 0.636173
Target:  5'- --gAGGCGGGGagucGGUcgGCGUCCCCg -3'
miRNA:   3'- cugUCCGCCUUgu--CCAcgCGCAGGGG- -5'
5753 3' -59.3 NC_001806.1 + 119977 0.69 0.626192
Target:  5'- gGGCAGGCGGAGCuGcUGCuacGCuUUCCCg -3'
miRNA:   3'- -CUGUCCGCCUUGuCcACG---CGcAGGGG- -5'
5753 3' -59.3 NC_001806.1 + 20543 0.69 0.623198
Target:  5'- gGGCGGuaaugagaugccauGCGGGGCGGG-GCGCGgaCCCa -3'
miRNA:   3'- -CUGUC--------------CGCCUUGUCCaCGCGCagGGG- -5'
5753 3' -59.3 NC_001806.1 + 150095 0.69 0.616215
Target:  5'- aGGCAGGCccaccGCGGG-GCGgcccCGUCCCCg -3'
miRNA:   3'- -CUGUCCGccu--UGUCCaCGC----GCAGGGG- -5'
5753 3' -59.3 NC_001806.1 + 5937 0.69 0.615218
Target:  5'- cGGCGGGCGGGACcgccccaAGG-GgGCGgggCCgCCg -3'
miRNA:   3'- -CUGUCCGCCUUG-------UCCaCgCGCa--GG-GG- -5'
5753 3' -59.3 NC_001806.1 + 16877 0.69 0.60625
Target:  5'- --gGGGCGGGGagucCAGGcaCGCGUCCUCg -3'
miRNA:   3'- cugUCCGCCUU----GUCCacGCGCAGGGG- -5'
5753 3' -59.3 NC_001806.1 + 95076 0.69 0.596302
Target:  5'- cGGCGGGCGGAGCAuuucgaucGCGCGUUCg- -3'
miRNA:   3'- -CUGUCCGCCUUGUcca-----CGCGCAGGgg -5'
5753 3' -59.3 NC_001806.1 + 132923 0.69 0.586381
Target:  5'- -uCGGGgGGAGCGGGcUG-GCGgacCCCCa -3'
miRNA:   3'- cuGUCCgCCUUGUCC-ACgCGCa--GGGG- -5'
5753 3' -59.3 NC_001806.1 + 89519 0.69 0.57649
Target:  5'- -cCGGGCGGcgAGCuGcUGCGCGgcgCCCCg -3'
miRNA:   3'- cuGUCCGCC--UUGuCcACGCGCa--GGGG- -5'
5753 3' -59.3 NC_001806.1 + 83264 0.7 0.556828
Target:  5'- gGGCGGGCgacGGAGgGGGUucgggcggGCGCGgaggaCCCCg -3'
miRNA:   3'- -CUGUCCG---CCUUgUCCA--------CGCGCa----GGGG- -5'
5753 3' -59.3 NC_001806.1 + 66404 0.7 0.556828
Target:  5'- --aAGGCGGcguacguACAGGUGCgugcggugggGCGcCCCCg -3'
miRNA:   3'- cugUCCGCCu------UGUCCACG----------CGCaGGGG- -5'
5753 3' -59.3 NC_001806.1 + 31958 0.7 0.537363
Target:  5'- gGGguGGCGGGGCGGGacgGgGCG-CCCa -3'
miRNA:   3'- -CUguCCGCCUUGUCCa--CgCGCaGGGg -5'
5753 3' -59.3 NC_001806.1 + 47465 0.7 0.527719
Target:  5'- cGAUGuGGUGGAAUGGGgggacGCGUacGUCCCCg -3'
miRNA:   3'- -CUGU-CCGCCUUGUCCa----CGCG--CAGGGG- -5'
5753 3' -59.3 NC_001806.1 + 86043 0.7 0.518139
Target:  5'- cGCGGGgGGGGC-GG-GCuCGUCCCCu -3'
miRNA:   3'- cUGUCCgCCUUGuCCaCGcGCAGGGG- -5'
5753 3' -59.3 NC_001806.1 + 5660 0.71 0.508629
Target:  5'- cAUGGGCGGGgcgcgaggGCGGGUGggucCGCG-CCCCg -3'
miRNA:   3'- cUGUCCGCCU--------UGUCCAC----GCGCaGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.