miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5753 3' -59.3 NC_001806.1 + 52868 0.67 0.744033
Target:  5'- cGACAGGCGaccGCcGGcgGCGaCGUgCCCCu -3'
miRNA:   3'- -CUGUCCGCcu-UGuCCa-CGC-GCA-GGGG- -5'
5753 3' -59.3 NC_001806.1 + 18945 0.67 0.734524
Target:  5'- cGCAGGCGGuugGCAcuGcGUGgGgGUCCCg -3'
miRNA:   3'- cUGUCCGCCu--UGU--C-CACgCgCAGGGg -5'
5753 3' -59.3 NC_001806.1 + 3512 0.67 0.734524
Target:  5'- uGGCGGGCGGcguCGGG-GuCGuCGcCCCCc -3'
miRNA:   3'- -CUGUCCGCCuu-GUCCaC-GC-GCaGGGG- -5'
5753 3' -59.3 NC_001806.1 + 19886 0.67 0.728777
Target:  5'- gGACcGGUGGGuuucugucgucggagGCccccGGG-GUGCGUCCCCu -3'
miRNA:   3'- -CUGuCCGCCU---------------UG----UCCaCGCGCAGGGG- -5'
5753 3' -59.3 NC_001806.1 + 147186 0.67 0.72493
Target:  5'- aGGCGGaaGCGGAGgAGGa-CGCGgCCCCg -3'
miRNA:   3'- -CUGUC--CGCCUUgUCCacGCGCaGGGG- -5'
5753 3' -59.3 NC_001806.1 + 127750 0.67 0.72493
Target:  5'- -cCGGGCGGGcugcCGGGUGCGgG-CCUg -3'
miRNA:   3'- cuGUCCGCCUu---GUCCACGCgCaGGGg -5'
5753 3' -59.3 NC_001806.1 + 55096 0.67 0.72493
Target:  5'- cGGgGGGCGGAACAugcGGacGCGCacccacGUCCCg -3'
miRNA:   3'- -CUgUCCGCCUUGU---CCa-CGCG------CAGGGg -5'
5753 3' -59.3 NC_001806.1 + 102762 0.67 0.716231
Target:  5'- uGCGGGUGGu-CAGGggaaaguccgugaugGUGCGUCCUg -3'
miRNA:   3'- cUGUCCGCCuuGUCCa--------------CGCGCAGGGg -5'
5753 3' -59.3 NC_001806.1 + 25004 0.67 0.71526
Target:  5'- aACGGGcCGGGACGGGgcgggGCGCuuGUgagaCCCg -3'
miRNA:   3'- cUGUCC-GCCUUGUCCa----CGCG--CAg---GGG- -5'
5753 3' -59.3 NC_001806.1 + 33645 0.67 0.71526
Target:  5'- cACGGGCGGGggGgGGGUGuCGCGggCCg -3'
miRNA:   3'- cUGUCCGCCU--UgUCCAC-GCGCagGGg -5'
5753 3' -59.3 NC_001806.1 + 73135 0.67 0.71526
Target:  5'- aGGCGGGCGaGGACGacGG-GCccacgguuccgGCGUCCUCa -3'
miRNA:   3'- -CUGUCCGC-CUUGU--CCaCG-----------CGCAGGGG- -5'
5753 3' -59.3 NC_001806.1 + 77382 0.67 0.71526
Target:  5'- aGACGGGCGcGGGCGcGGcgGcCGCGcccgcgCCCCu -3'
miRNA:   3'- -CUGUCCGC-CUUGU-CCa-C-GCGCa-----GGGG- -5'
5753 3' -59.3 NC_001806.1 + 25904 0.67 0.71429
Target:  5'- aGGCGGGCGGcgguccgGGCGGcGUGCGCG-CgCg -3'
miRNA:   3'- -CUGUCCGCC-------UUGUC-CACGCGCaGgGg -5'
5753 3' -59.3 NC_001806.1 + 145719 0.67 0.695727
Target:  5'- cGGCccaccuGGCcGcGCGGGUGCGCGUgCCUu -3'
miRNA:   3'- -CUGu-----CCGcCuUGUCCACGCGCAgGGG- -5'
5753 3' -59.3 NC_001806.1 + 90673 0.68 0.68588
Target:  5'- cAUAGGCGGGGCggAGGUGCaccgcauacccGUGUaCCCg -3'
miRNA:   3'- cUGUCCGCCUUG--UCCACG-----------CGCAgGGG- -5'
5753 3' -59.3 NC_001806.1 + 151445 0.68 0.68588
Target:  5'- cGGgGGGCGGcGGCGGGgcggccgcggGCGCG-CUCCu -3'
miRNA:   3'- -CUgUCCGCC-UUGUCCa---------CGCGCaGGGG- -5'
5753 3' -59.3 NC_001806.1 + 148909 0.68 0.684893
Target:  5'- --gAGGCGGAGucgucguCAuGGUGgucgGCGUCCCCc -3'
miRNA:   3'- cugUCCGCCUU-------GU-CCACg---CGCAGGGG- -5'
5753 3' -59.3 NC_001806.1 + 147662 0.68 0.670041
Target:  5'- gGGCGGGCGGccGGCuccgccccgggggccGGG-GCGCGggggcgggCCCCg -3'
miRNA:   3'- -CUGUCCGCC--UUG---------------UCCaCGCGCa-------GGGG- -5'
5753 3' -59.3 NC_001806.1 + 6081 0.68 0.666068
Target:  5'- gGGCGGGCccGGGcgGCGGGggGCGgGUCUCUc -3'
miRNA:   3'- -CUGUCCG--CCU--UGUCCa-CGCgCAGGGG- -5'
5753 3' -59.3 NC_001806.1 + 5764 0.68 0.656119
Target:  5'- aACGGGCagGGGGCGGG-GCcCGggCCCCg -3'
miRNA:   3'- cUGUCCG--CCUUGUCCaCGcGCa-GGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.