miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5753 3' -59.3 NC_001806.1 + 95076 0.69 0.596302
Target:  5'- cGGCGGGCGGAGCAuuucgaucGCGCGUUCg- -3'
miRNA:   3'- -CUGUCCGCCUUGUcca-----CGCGCAGGgg -5'
5753 3' -59.3 NC_001806.1 + 16877 0.69 0.60625
Target:  5'- --gGGGCGGGGagucCAGGcaCGCGUCCUCg -3'
miRNA:   3'- cugUCCGCCUU----GUCCacGCGCAGGGG- -5'
5753 3' -59.3 NC_001806.1 + 5937 0.69 0.615218
Target:  5'- cGGCGGGCGGGACcgccccaAGG-GgGCGgggCCgCCg -3'
miRNA:   3'- -CUGUCCGCCUUG-------UCCaCgCGCa--GG-GG- -5'
5753 3' -59.3 NC_001806.1 + 150095 0.69 0.616215
Target:  5'- aGGCAGGCccaccGCGGG-GCGgcccCGUCCCCg -3'
miRNA:   3'- -CUGUCCGccu--UGUCCaCGC----GCAGGGG- -5'
5753 3' -59.3 NC_001806.1 + 20543 0.69 0.623198
Target:  5'- gGGCGGuaaugagaugccauGCGGGGCGGG-GCGCGgaCCCa -3'
miRNA:   3'- -CUGUC--------------CGCCUUGUCCaCGCGCagGGG- -5'
5753 3' -59.3 NC_001806.1 + 119977 0.69 0.626192
Target:  5'- gGGCAGGCGGAGCuGcUGCuacGCuUUCCCg -3'
miRNA:   3'- -CUGUCCGCCUUGuCcACG---CGcAGGGG- -5'
5753 3' -59.3 NC_001806.1 + 45517 0.68 0.636173
Target:  5'- uGAgGGGUGGGGguGGaGgGUGUCCCa -3'
miRNA:   3'- -CUgUCCGCCUUguCCaCgCGCAGGGg -5'
5753 3' -59.3 NC_001806.1 + 133706 0.68 0.636173
Target:  5'- --gAGGCGGGGagucGGUcgGCGUCCCCg -3'
miRNA:   3'- cugUCCGCCUUgu--CCAcgCGCAGGGG- -5'
5753 3' -59.3 NC_001806.1 + 2804 0.68 0.636173
Target:  5'- cGCGGGCuGGGCGGGgGCGgGcucgggCCCCg -3'
miRNA:   3'- cUGUCCGcCUUGUCCaCGCgCa-----GGGG- -5'
5753 3' -59.3 NC_001806.1 + 49498 0.68 0.646151
Target:  5'- --gGGGCGGGucggcgguucGCGGGUgGCGCcGUCgCCg -3'
miRNA:   3'- cugUCCGCCU----------UGUCCA-CGCG-CAGgGG- -5'
5753 3' -59.3 NC_001806.1 + 21280 0.68 0.646151
Target:  5'- cGACGcccGGCGGGACGGGaGgGC--CCCCg -3'
miRNA:   3'- -CUGU---CCGCCUUGUCCaCgCGcaGGGG- -5'
5753 3' -59.3 NC_001806.1 + 84880 0.68 0.646151
Target:  5'- cGGCcGGCGGGACucuGGgcgugGUGCGUCgggccuCCCg -3'
miRNA:   3'- -CUGuCCGCCUUGu--CCa----CGCGCAG------GGG- -5'
5753 3' -59.3 NC_001806.1 + 5764 0.68 0.656119
Target:  5'- aACGGGCagGGGGCGGG-GCcCGggCCCCg -3'
miRNA:   3'- cUGUCCG--CCUUGUCCaCGcGCa-GGGG- -5'
5753 3' -59.3 NC_001806.1 + 6081 0.68 0.666068
Target:  5'- gGGCGGGCccGGGcgGCGGGggGCGgGUCUCUc -3'
miRNA:   3'- -CUGUCCG--CCU--UGUCCa-CGCgCAGGGG- -5'
5753 3' -59.3 NC_001806.1 + 147662 0.68 0.670041
Target:  5'- gGGCGGGCGGccGGCuccgccccgggggccGGG-GCGCGggggcgggCCCCg -3'
miRNA:   3'- -CUGUCCGCC--UUG---------------UCCaCGCGCa-------GGGG- -5'
5753 3' -59.3 NC_001806.1 + 148909 0.68 0.684893
Target:  5'- --gAGGCGGAGucgucguCAuGGUGgucgGCGUCCCCc -3'
miRNA:   3'- cugUCCGCCUU-------GU-CCACg---CGCAGGGG- -5'
5753 3' -59.3 NC_001806.1 + 151445 0.68 0.68588
Target:  5'- cGGgGGGCGGcGGCGGGgcggccgcggGCGCG-CUCCu -3'
miRNA:   3'- -CUgUCCGCC-UUGUCCa---------CGCGCaGGGG- -5'
5753 3' -59.3 NC_001806.1 + 90673 0.68 0.68588
Target:  5'- cAUAGGCGGGGCggAGGUGCaccgcauacccGUGUaCCCg -3'
miRNA:   3'- cUGUCCGCCUUG--UCCACG-----------CGCAgGGG- -5'
5753 3' -59.3 NC_001806.1 + 145719 0.67 0.695727
Target:  5'- cGGCccaccuGGCcGcGCGGGUGCGCGUgCCUu -3'
miRNA:   3'- -CUGu-----CCGcCuUGUCCACGCGCAgGGG- -5'
5753 3' -59.3 NC_001806.1 + 25904 0.67 0.71429
Target:  5'- aGGCGGGCGGcgguccgGGCGGcGUGCGCG-CgCg -3'
miRNA:   3'- -CUGUCCGCC-------UUGUC-CACGCGCaGgGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.