miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5753 3' -59.3 NC_001806.1 + 21280 0.68 0.646151
Target:  5'- cGACGcccGGCGGGACGGGaGgGC--CCCCg -3'
miRNA:   3'- -CUGU---CCGCCUUGUCCaCgCGcaGGGG- -5'
5753 3' -59.3 NC_001806.1 + 25004 0.67 0.71526
Target:  5'- aACGGGcCGGGACGGGgcgggGCGCuuGUgagaCCCg -3'
miRNA:   3'- cUGUCC-GCCUUGUCCa----CGCG--CAg---GGG- -5'
5753 3' -59.3 NC_001806.1 + 25418 0.8 0.136952
Target:  5'- cGAgGGGCGGuGguGGUGCGCGggcgCCCCc -3'
miRNA:   3'- -CUgUCCGCCuUguCCACGCGCa---GGGG- -5'
5753 3' -59.3 NC_001806.1 + 25904 0.67 0.71429
Target:  5'- aGGCGGGCGGcgguccgGGCGGcGUGCGCG-CgCg -3'
miRNA:   3'- -CUGUCCGCC-------UUGUC-CACGCGCaGgGg -5'
5753 3' -59.3 NC_001806.1 + 26827 0.71 0.480564
Target:  5'- cGCGGGCGGGGaGGGgGCGCcGgagCCCCc -3'
miRNA:   3'- cUGUCCGCCUUgUCCaCGCG-Ca--GGGG- -5'
5753 3' -59.3 NC_001806.1 + 31958 0.7 0.537363
Target:  5'- gGGguGGCGGGGCGGGacgGgGCG-CCCa -3'
miRNA:   3'- -CUguCCGCCUUGUCCa--CgCGCaGGGg -5'
5753 3' -59.3 NC_001806.1 + 33645 0.67 0.71526
Target:  5'- cACGGGCGGGggGgGGGUGuCGCGggCCg -3'
miRNA:   3'- cUGUCCGCCU--UgUCCAC-GCGCagGGg -5'
5753 3' -59.3 NC_001806.1 + 45517 0.68 0.636173
Target:  5'- uGAgGGGUGGGGguGGaGgGUGUCCCa -3'
miRNA:   3'- -CUgUCCGCCUUguCCaCgCGCAGGGg -5'
5753 3' -59.3 NC_001806.1 + 47465 0.7 0.527719
Target:  5'- cGAUGuGGUGGAAUGGGgggacGCGUacGUCCCCg -3'
miRNA:   3'- -CUGU-CCGCCUUGUCCa----CGCG--CAGGGG- -5'
5753 3' -59.3 NC_001806.1 + 49498 0.68 0.646151
Target:  5'- --gGGGCGGGucggcgguucGCGGGUgGCGCcGUCgCCg -3'
miRNA:   3'- cugUCCGCCU----------UGUCCA-CGCG-CAGgGG- -5'
5753 3' -59.3 NC_001806.1 + 52868 0.67 0.744033
Target:  5'- cGACAGGCGaccGCcGGcgGCGaCGUgCCCCu -3'
miRNA:   3'- -CUGUCCGCcu-UGuCCa-CGC-GCA-GGGG- -5'
5753 3' -59.3 NC_001806.1 + 53097 0.66 0.790011
Target:  5'- aGACGGugaGCGaGGACGGGggGCGUGUCUa- -3'
miRNA:   3'- -CUGUC---CGC-CUUGUCCa-CGCGCAGGgg -5'
5753 3' -59.3 NC_001806.1 + 55096 0.67 0.72493
Target:  5'- cGGgGGGCGGAACAugcGGacGCGCacccacGUCCCg -3'
miRNA:   3'- -CUgUCCGCCUUGU---CCa-CGCG------CAGGGg -5'
5753 3' -59.3 NC_001806.1 + 56684 0.66 0.753449
Target:  5'- -uCGGGgGGGACGGGgGCcCGggaaCCCCg -3'
miRNA:   3'- cuGUCCgCCUUGUCCaCGcGCa---GGGG- -5'
5753 3' -59.3 NC_001806.1 + 57155 0.66 0.781053
Target:  5'- cGCgAGG-GGAGgGGGUGCGCGcauaaagCCCa -3'
miRNA:   3'- cUG-UCCgCCUUgUCCACGCGCa------GGGg -5'
5753 3' -59.3 NC_001806.1 + 57755 0.71 0.508629
Target:  5'- aGC-GGCGGGACGGGccGC-CGUCCCg -3'
miRNA:   3'- cUGuCCGCCUUGUCCa-CGcGCAGGGg -5'
5753 3' -59.3 NC_001806.1 + 57824 0.75 0.295971
Target:  5'- uGCGGGCGGGgguGC-GGUGgGCGaCCCCg -3'
miRNA:   3'- cUGUCCGCCU---UGuCCACgCGCaGGGG- -5'
5753 3' -59.3 NC_001806.1 + 64810 0.66 0.790011
Target:  5'- --gGGGaCGGggUAGGccgUGCcCGUUCCCa -3'
miRNA:   3'- cugUCC-GCCuuGUCC---ACGcGCAGGGG- -5'
5753 3' -59.3 NC_001806.1 + 66404 0.7 0.556828
Target:  5'- --aAGGCGGcguacguACAGGUGCgugcggugggGCGcCCCCg -3'
miRNA:   3'- cugUCCGCCu------UGUCCACG----------CGCaGGGG- -5'
5753 3' -59.3 NC_001806.1 + 69057 0.66 0.771967
Target:  5'- cGCAGcCGcGAGgAGGUGCGCGUgucgacggCCCUc -3'
miRNA:   3'- cUGUCcGC-CUUgUCCACGCGCA--------GGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.