miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5753 3' -59.3 NC_001806.1 + 2804 0.68 0.636173
Target:  5'- cGCGGGCuGGGCGGGgGCGgGcucgggCCCCg -3'
miRNA:   3'- cUGUCCGcCUUGUCCaCGCgCa-----GGGG- -5'
5753 3' -59.3 NC_001806.1 + 2852 0.66 0.762763
Target:  5'- cGCGGGCGcGGGgAGGgggGCGCGggcgUCCg -3'
miRNA:   3'- cUGUCCGC-CUUgUCCa--CGCGCa---GGGg -5'
5753 3' -59.3 NC_001806.1 + 3099 0.72 0.444365
Target:  5'- cGGCGGccGCGGAgcucgGCAGGcGCGgGUCCCg -3'
miRNA:   3'- -CUGUC--CGCCU-----UGUCCaCGCgCAGGGg -5'
5753 3' -59.3 NC_001806.1 + 3307 0.71 0.471376
Target:  5'- cGGCGgcGGCGGGgaaGCGGGgcccGCGgGUCCCUc -3'
miRNA:   3'- -CUGU--CCGCCU---UGUCCa---CGCgCAGGGG- -5'
5753 3' -59.3 NC_001806.1 + 3512 0.67 0.734524
Target:  5'- uGGCGGGCGGcguCGGG-GuCGuCGcCCCCc -3'
miRNA:   3'- -CUGUCCGCCuu-GUCCaC-GC-GCaGGGG- -5'
5753 3' -59.3 NC_001806.1 + 4424 0.66 0.762763
Target:  5'- gGGgGGGUGGcccgGGCGGGgGCGgCGUCCgCCc -3'
miRNA:   3'- -CUgUCCGCC----UUGUCCaCGC-GCAGG-GG- -5'
5753 3' -59.3 NC_001806.1 + 5660 0.71 0.508629
Target:  5'- cAUGGGCGGGgcgcgaggGCGGGUGggucCGCG-CCCCg -3'
miRNA:   3'- cUGUCCGCCU--------UGUCCAC----GCGCaGGGG- -5'
5753 3' -59.3 NC_001806.1 + 5764 0.68 0.656119
Target:  5'- aACGGGCagGGGGCGGG-GCcCGggCCCCg -3'
miRNA:   3'- cUGUCCG--CCUUGUCCaCGcGCa-GGGG- -5'
5753 3' -59.3 NC_001806.1 + 5937 0.69 0.615218
Target:  5'- cGGCGGGCGGGACcgccccaAGG-GgGCGgggCCgCCg -3'
miRNA:   3'- -CUGUCCGCCUUG-------UCCaCgCGCa--GG-GG- -5'
5753 3' -59.3 NC_001806.1 + 6081 0.68 0.666068
Target:  5'- gGGCGGGCccGGGcgGCGGGggGCGgGUCUCUc -3'
miRNA:   3'- -CUGUCCG--CCU--UGUCCa-CGCgCAGGGG- -5'
5753 3' -59.3 NC_001806.1 + 9941 0.66 0.762763
Target:  5'- uACAGGcCGGAGuguugUGGG-GaCGCGUCCCg -3'
miRNA:   3'- cUGUCC-GCCUU-----GUCCaC-GCGCAGGGg -5'
5753 3' -59.3 NC_001806.1 + 10394 0.66 0.753449
Target:  5'- gGGCGGGgGGAgGCGGGagccgGgGgGUCCCg -3'
miRNA:   3'- -CUGUCCgCCU-UGUCCa----CgCgCAGGGg -5'
5753 3' -59.3 NC_001806.1 + 12503 1.1 0.001208
Target:  5'- cGACAGGCGGAACAGGUGCGCGUCCCCc -3'
miRNA:   3'- -CUGUCCGCCUUGUCCACGCGCAGGGG- -5'
5753 3' -59.3 NC_001806.1 + 16646 0.67 0.744033
Target:  5'- cGAUAaG-GGGACcGGU-CGCGUCCCCg -3'
miRNA:   3'- -CUGUcCgCCUUGuCCAcGCGCAGGGG- -5'
5753 3' -59.3 NC_001806.1 + 16877 0.69 0.60625
Target:  5'- --gGGGCGGGGagucCAGGcaCGCGUCCUCg -3'
miRNA:   3'- cugUCCGCCUU----GUCCacGCGCAGGGG- -5'
5753 3' -59.3 NC_001806.1 + 18945 0.67 0.734524
Target:  5'- cGCAGGCGGuugGCAcuGcGUGgGgGUCCCg -3'
miRNA:   3'- cUGUCCGCCu--UGU--C-CACgCgCAGGGg -5'
5753 3' -59.3 NC_001806.1 + 19492 0.71 0.489837
Target:  5'- --gGGGCGGGAaGGGcgcuugcgcuUGCGCGUgCCCa -3'
miRNA:   3'- cugUCCGCCUUgUCC----------ACGCGCAgGGG- -5'
5753 3' -59.3 NC_001806.1 + 19886 0.67 0.728777
Target:  5'- gGACcGGUGGGuuucugucgucggagGCccccGGG-GUGCGUCCCCu -3'
miRNA:   3'- -CUGuCCGCCU---------------UG----UCCaCGCGCAGGGG- -5'
5753 3' -59.3 NC_001806.1 + 20543 0.69 0.623198
Target:  5'- gGGCGGuaaugagaugccauGCGGGGCGGG-GCGCGgaCCCa -3'
miRNA:   3'- -CUGUC--------------CGCCUUGUCCaCGCGCagGGG- -5'
5753 3' -59.3 NC_001806.1 + 20910 0.66 0.781053
Target:  5'- gGACgaAGcGCGGGAgGGGgaucgGC-CGUCCCUg -3'
miRNA:   3'- -CUG--UC-CGCCUUgUCCa----CGcGCAGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.