miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5753 3' -59.3 NC_001806.1 + 151445 0.68 0.68588
Target:  5'- cGGgGGGCGGcGGCGGGgcggccgcggGCGCG-CUCCu -3'
miRNA:   3'- -CUgUCCGCC-UUGUCCa---------CGCGCaGGGG- -5'
5753 3' -59.3 NC_001806.1 + 150095 0.69 0.616215
Target:  5'- aGGCAGGCccaccGCGGG-GCGgcccCGUCCCCg -3'
miRNA:   3'- -CUGUCCGccu--UGUCCaCGC----GCAGGGG- -5'
5753 3' -59.3 NC_001806.1 + 148909 0.68 0.684893
Target:  5'- --gAGGCGGAGucgucguCAuGGUGgucgGCGUCCCCc -3'
miRNA:   3'- cugUCCGCCUU-------GU-CCACg---CGCAGGGG- -5'
5753 3' -59.3 NC_001806.1 + 147662 0.68 0.670041
Target:  5'- gGGCGGGCGGccGGCuccgccccgggggccGGG-GCGCGggggcgggCCCCg -3'
miRNA:   3'- -CUGUCCGCC--UUG---------------UCCaCGCGCa-------GGGG- -5'
5753 3' -59.3 NC_001806.1 + 147186 0.67 0.72493
Target:  5'- aGGCGGaaGCGGAGgAGGa-CGCGgCCCCg -3'
miRNA:   3'- -CUGUC--CGCCUUgUCCacGCGCaGGGG- -5'
5753 3' -59.3 NC_001806.1 + 145719 0.67 0.695727
Target:  5'- cGGCccaccuGGCcGcGCGGGUGCGCGUgCCUu -3'
miRNA:   3'- -CUGu-----CCGcCuUGUCCACGCGCAgGGG- -5'
5753 3' -59.3 NC_001806.1 + 144574 0.66 0.753449
Target:  5'- -cCGGGCGcGucCGGGUGCcGCGgcUCUCCg -3'
miRNA:   3'- cuGUCCGC-CuuGUCCACG-CGC--AGGGG- -5'
5753 3' -59.3 NC_001806.1 + 134234 0.73 0.409748
Target:  5'- cGCAGuCGGAGCGGGgGgGCGgCCCCg -3'
miRNA:   3'- cUGUCcGCCUUGUCCaCgCGCaGGGG- -5'
5753 3' -59.3 NC_001806.1 + 133706 0.68 0.636173
Target:  5'- --gAGGCGGGGagucGGUcgGCGUCCCCg -3'
miRNA:   3'- cugUCCGCCUUgu--CCAcgCGCAGGGG- -5'
5753 3' -59.3 NC_001806.1 + 132923 0.69 0.586381
Target:  5'- -uCGGGgGGAGCGGGcUG-GCGgacCCCCa -3'
miRNA:   3'- cuGUCCgCCUUGUCC-ACgCGCa--GGGG- -5'
5753 3' -59.3 NC_001806.1 + 127750 0.67 0.72493
Target:  5'- -cCGGGCGGGcugcCGGGUGCGgG-CCUg -3'
miRNA:   3'- cuGUCCGCCUu---GUCCACGCgCaGGGg -5'
5753 3' -59.3 NC_001806.1 + 120325 0.67 0.744033
Target:  5'- gGACgGGGCGGu-CGGGggcgGCGgGUCguCCCg -3'
miRNA:   3'- -CUG-UCCGCCuuGUCCa---CGCgCAG--GGG- -5'
5753 3' -59.3 NC_001806.1 + 119977 0.69 0.626192
Target:  5'- gGGCAGGCGGAGCuGcUGCuacGCuUUCCCg -3'
miRNA:   3'- -CUGUCCGCCUUGuCcACG---CGcAGGGG- -5'
5753 3' -59.3 NC_001806.1 + 112429 0.67 0.744033
Target:  5'- cGCGGGCGGccggucGACgGGGUGCuCGUCaCCa -3'
miRNA:   3'- cUGUCCGCC------UUG-UCCACGcGCAGgGG- -5'
5753 3' -59.3 NC_001806.1 + 112058 0.66 0.798834
Target:  5'- aGGCccuGGaCGGGACGGGUaucgGCGCGcaUCgCCa -3'
miRNA:   3'- -CUGu--CC-GCCUUGUCCA----CGCGC--AGgGG- -5'
5753 3' -59.3 NC_001806.1 + 106873 0.74 0.353389
Target:  5'- cGCGGGCGccGAGCAGGgccCGCGcCCCCc -3'
miRNA:   3'- cUGUCCGC--CUUGUCCac-GCGCaGGGG- -5'
5753 3' -59.3 NC_001806.1 + 103731 0.74 0.33097
Target:  5'- aACuGGCGGGccgcugacucggGCGGGUcGCGCG-CCCCa -3'
miRNA:   3'- cUGuCCGCCU------------UGUCCA-CGCGCaGGGG- -5'
5753 3' -59.3 NC_001806.1 + 102762 0.67 0.716231
Target:  5'- uGCGGGUGGu-CAGGggaaaguccgugaugGUGCGUCCUg -3'
miRNA:   3'- cUGUCCGCCuuGUCCa--------------CGCGCAGGGg -5'
5753 3' -59.3 NC_001806.1 + 95306 0.72 0.462278
Target:  5'- gGGCGcGGCGGAcgcGCccaAGGgcgGCGCGggCCCCg -3'
miRNA:   3'- -CUGU-CCGCCU---UG---UCCa--CGCGCa-GGGG- -5'
5753 3' -59.3 NC_001806.1 + 95076 0.69 0.596302
Target:  5'- cGGCGGGCGGAGCAuuucgaucGCGCGUUCg- -3'
miRNA:   3'- -CUGUCCGCCUUGUcca-----CGCGCAGGgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.