miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5753 3' -59.3 NC_001806.1 + 12503 1.1 0.001208
Target:  5'- cGACAGGCGGAACAGGUGCGCGUCCCCc -3'
miRNA:   3'- -CUGUCCGCCUUGUCCACGCGCAGGGG- -5'
5753 3' -59.3 NC_001806.1 + 25418 0.8 0.136952
Target:  5'- cGAgGGGCGGuGguGGUGCGCGggcgCCCCc -3'
miRNA:   3'- -CUgUCCGCCuUguCCACGCGCa---GGGG- -5'
5753 3' -59.3 NC_001806.1 + 57824 0.75 0.295971
Target:  5'- uGCGGGCGGGgguGC-GGUGgGCGaCCCCg -3'
miRNA:   3'- cUGUCCGCCU---UGuCCACgCGCaGGGG- -5'
5753 3' -59.3 NC_001806.1 + 103731 0.74 0.33097
Target:  5'- aACuGGCGGGccgcugacucggGCGGGUcGCGCG-CCCCa -3'
miRNA:   3'- cUGuCCGCCU------------UGUCCA-CGCGCaGGGG- -5'
5753 3' -59.3 NC_001806.1 + 106873 0.74 0.353389
Target:  5'- cGCGGGCGccGAGCAGGgccCGCGcCCCCc -3'
miRNA:   3'- cUGUCCGC--CUUGUCCac-GCGCaGGGG- -5'
5753 3' -59.3 NC_001806.1 + 134234 0.73 0.409748
Target:  5'- cGCAGuCGGAGCGGGgGgGCGgCCCCg -3'
miRNA:   3'- cUGUCcGCCUUGUCCaCgCGCaGGGG- -5'
5753 3' -59.3 NC_001806.1 + 3099 0.72 0.444365
Target:  5'- cGGCGGccGCGGAgcucgGCAGGcGCGgGUCCCg -3'
miRNA:   3'- -CUGUC--CGCCU-----UGUCCaCGCgCAGGGg -5'
5753 3' -59.3 NC_001806.1 + 95306 0.72 0.462278
Target:  5'- gGGCGcGGCGGAcgcGCccaAGGgcgGCGCGggCCCCg -3'
miRNA:   3'- -CUGU-CCGCCU---UG---UCCa--CGCGCa-GGGG- -5'
5753 3' -59.3 NC_001806.1 + 3307 0.71 0.471376
Target:  5'- cGGCGgcGGCGGGgaaGCGGGgcccGCGgGUCCCUc -3'
miRNA:   3'- -CUGU--CCGCCU---UGUCCa---CGCgCAGGGG- -5'
5753 3' -59.3 NC_001806.1 + 26827 0.71 0.480564
Target:  5'- cGCGGGCGGGGaGGGgGCGCcGgagCCCCc -3'
miRNA:   3'- cUGUCCGCCUUgUCCaCGCG-Ca--GGGG- -5'
5753 3' -59.3 NC_001806.1 + 19492 0.71 0.489837
Target:  5'- --gGGGCGGGAaGGGcgcuugcgcuUGCGCGUgCCCa -3'
miRNA:   3'- cugUCCGCCUUgUCC----------ACGCGCAgGGG- -5'
5753 3' -59.3 NC_001806.1 + 5660 0.71 0.508629
Target:  5'- cAUGGGCGGGgcgcgaggGCGGGUGggucCGCG-CCCCg -3'
miRNA:   3'- cUGUCCGCCU--------UGUCCAC----GCGCaGGGG- -5'
5753 3' -59.3 NC_001806.1 + 57755 0.71 0.508629
Target:  5'- aGC-GGCGGGACGGGccGC-CGUCCCg -3'
miRNA:   3'- cUGuCCGCCUUGUCCa-CGcGCAGGGg -5'
5753 3' -59.3 NC_001806.1 + 86043 0.7 0.518139
Target:  5'- cGCGGGgGGGGC-GG-GCuCGUCCCCu -3'
miRNA:   3'- cUGUCCgCCUUGuCCaCGcGCAGGGG- -5'
5753 3' -59.3 NC_001806.1 + 47465 0.7 0.527719
Target:  5'- cGAUGuGGUGGAAUGGGgggacGCGUacGUCCCCg -3'
miRNA:   3'- -CUGU-CCGCCUUGUCCa----CGCG--CAGGGG- -5'
5753 3' -59.3 NC_001806.1 + 31958 0.7 0.537363
Target:  5'- gGGguGGCGGGGCGGGacgGgGCG-CCCa -3'
miRNA:   3'- -CUguCCGCCUUGUCCa--CgCGCaGGGg -5'
5753 3' -59.3 NC_001806.1 + 66404 0.7 0.556828
Target:  5'- --aAGGCGGcguacguACAGGUGCgugcggugggGCGcCCCCg -3'
miRNA:   3'- cugUCCGCCu------UGUCCACG----------CGCaGGGG- -5'
5753 3' -59.3 NC_001806.1 + 83264 0.7 0.556828
Target:  5'- gGGCGGGCgacGGAGgGGGUucgggcggGCGCGgaggaCCCCg -3'
miRNA:   3'- -CUGUCCG---CCUUgUCCA--------CGCGCa----GGGG- -5'
5753 3' -59.3 NC_001806.1 + 89519 0.69 0.57649
Target:  5'- -cCGGGCGGcgAGCuGcUGCGCGgcgCCCCg -3'
miRNA:   3'- cuGUCCGCC--UUGuCcACGCGCa--GGGG- -5'
5753 3' -59.3 NC_001806.1 + 132923 0.69 0.586381
Target:  5'- -uCGGGgGGAGCGGGcUG-GCGgacCCCCa -3'
miRNA:   3'- cuGUCCgCCUUGUCC-ACgCGCa--GGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.