miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5754 3' -57.2 NC_001806.1 + 12392 1.09 0.002152
Target:  5'- cCACGGACAACCAGGCUGGUGGCACAGa -3'
miRNA:   3'- -GUGCCUGUUGGUCCGACCACCGUGUC- -5'
5754 3' -57.2 NC_001806.1 + 26996 0.77 0.2919
Target:  5'- aGCGGGcCGACCGGGCUcgguuccggcgccgGGUGGCGgAGg -3'
miRNA:   3'- gUGCCU-GUUGGUCCGA--------------CCACCGUgUC- -5'
5754 3' -57.2 NC_001806.1 + 151007 0.75 0.352542
Target:  5'- gGCGGGCGGCCgAGGCccagaccaccaGGUGGCGCAc -3'
miRNA:   3'- gUGCCUGUUGG-UCCGa----------CCACCGUGUc -5'
5754 3' -57.2 NC_001806.1 + 147663 0.74 0.41807
Target:  5'- gGCGGGCGGCCggcuccgccccggGGGCcGG-GGCGCGGg -3'
miRNA:   3'- gUGCCUGUUGG-------------UCCGaCCaCCGUGUC- -5'
5754 3' -57.2 NC_001806.1 + 121830 0.74 0.418946
Target:  5'- gCGCGGACAacauccccccgACCAGcGCcgGGUGGCGCc- -3'
miRNA:   3'- -GUGCCUGU-----------UGGUC-CGa-CCACCGUGuc -5'
5754 3' -57.2 NC_001806.1 + 59142 0.73 0.473447
Target:  5'- --aGGGCAGCCGGGCcgGGgucucgGGUGCGGg -3'
miRNA:   3'- gugCCUGUUGGUCCGa-CCa-----CCGUGUC- -5'
5754 3' -57.2 NC_001806.1 + 110917 0.73 0.482878
Target:  5'- uUACGGGCuGACCggaAGGgUGGUGGCGCc- -3'
miRNA:   3'- -GUGCCUG-UUGG---UCCgACCACCGUGuc -5'
5754 3' -57.2 NC_001806.1 + 93466 0.72 0.502003
Target:  5'- gACGGACGcgGCCcuGgaGGUGGCGCAc -3'
miRNA:   3'- gUGCCUGU--UGGucCgaCCACCGUGUc -5'
5754 3' -57.2 NC_001806.1 + 30417 0.72 0.51169
Target:  5'- --gGGGgGGCCGGGCguggagGGUGGgCACGGg -3'
miRNA:   3'- gugCCUgUUGGUCCGa-----CCACC-GUGUC- -5'
5754 3' -57.2 NC_001806.1 + 4656 0.72 0.521453
Target:  5'- cCGCGG-CGGCUGGGCcGGcgGGCGCGGc -3'
miRNA:   3'- -GUGCCuGUUGGUCCGaCCa-CCGUGUC- -5'
5754 3' -57.2 NC_001806.1 + 11981 0.72 0.531288
Target:  5'- --aGGACAAaCAGGCUGGcguuUGGCGCGu -3'
miRNA:   3'- gugCCUGUUgGUCCGACC----ACCGUGUc -5'
5754 3' -57.2 NC_001806.1 + 74964 0.72 0.531288
Target:  5'- gGCGGACAugUggGGGCUGcUGGgGCAGu -3'
miRNA:   3'- gUGCCUGUugG--UCCGACcACCgUGUC- -5'
5754 3' -57.2 NC_001806.1 + 113677 0.72 0.541189
Target:  5'- gCAUGGcCGuguACCGGGacCUGGUGGCGCAc -3'
miRNA:   3'- -GUGCCuGU---UGGUCC--GACCACCGUGUc -5'
5754 3' -57.2 NC_001806.1 + 24682 0.71 0.551151
Target:  5'- gGCGGugcgcgcCGGCCcGGCccGGUGGCGCGGg -3'
miRNA:   3'- gUGCCu------GUUGGuCCGa-CCACCGUGUC- -5'
5754 3' -57.2 NC_001806.1 + 22419 0.71 0.581344
Target:  5'- gGCGGcCGGCCGcuucGGCUGGggccUGGCGCAc -3'
miRNA:   3'- gUGCCuGUUGGU----CCGACC----ACCGUGUc -5'
5754 3' -57.2 NC_001806.1 + 10082 0.71 0.59149
Target:  5'- uGCGGACGGCCAGGCgagacGUccacguacucgcGGCGCAc -3'
miRNA:   3'- gUGCCUGUUGGUCCGac---CA------------CCGUGUc -5'
5754 3' -57.2 NC_001806.1 + 46809 0.7 0.632296
Target:  5'- gACGGG-GACCGGGaCUgGGUGGCGgGGg -3'
miRNA:   3'- gUGCCUgUUGGUCC-GA-CCACCGUgUC- -5'
5754 3' -57.2 NC_001806.1 + 134251 0.7 0.652729
Target:  5'- gGCGGccccgGCAGCCGGaaugaggaGCUcgucggGGUGGCACAGa -3'
miRNA:   3'- gUGCC-----UGUUGGUC--------CGA------CCACCGUGUC- -5'
5754 3' -57.2 NC_001806.1 + 151305 0.7 0.652729
Target:  5'- gGCGGugGGCCGGGCcucUGGCGCc- -3'
miRNA:   3'- gUGCCugUUGGUCCGaccACCGUGuc -5'
5754 3' -57.2 NC_001806.1 + 2851 0.7 0.652729
Target:  5'- gCGCGGGCG--CGGGgaGGggGGCGCGGg -3'
miRNA:   3'- -GUGCCUGUugGUCCgaCCa-CCGUGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.