miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5754 3' -57.2 NC_001806.1 + 1545 0.66 0.85759
Target:  5'- cCGCGGcccGCGccACCGGGCcGGgccGGCGCGc -3'
miRNA:   3'- -GUGCC---UGU--UGGUCCGaCCa--CCGUGUc -5'
5754 3' -57.2 NC_001806.1 + 2785 0.69 0.662925
Target:  5'- cCGCGG-CGGCCcggggcgccgcGGGCUGGgcgGGgGCGGg -3'
miRNA:   3'- -GUGCCuGUUGG-----------UCCGACCa--CCgUGUC- -5'
5754 3' -57.2 NC_001806.1 + 2851 0.7 0.652729
Target:  5'- gCGCGGGCG--CGGGgaGGggGGCGCGGg -3'
miRNA:   3'- -GUGCCUGUugGUCCgaCCa-CCGUGUC- -5'
5754 3' -57.2 NC_001806.1 + 2940 0.66 0.849776
Target:  5'- -cCGGGCGGCCGGGCcg--GGC-CGGg -3'
miRNA:   3'- guGCCUGUUGGUCCGaccaCCGuGUC- -5'
5754 3' -57.2 NC_001806.1 + 3138 0.68 0.759212
Target:  5'- gCGCGGggcccagggccccgGCGACCAGGCUcacGGcGcGCACGGc -3'
miRNA:   3'- -GUGCC--------------UGUUGGUCCGA---CCaC-CGUGUC- -5'
5754 3' -57.2 NC_001806.1 + 4656 0.72 0.521453
Target:  5'- cCGCGG-CGGCUGGGCcGGcgGGCGCGGc -3'
miRNA:   3'- -GUGCCuGUUGGUCCGaCCa-CCGUGUC- -5'
5754 3' -57.2 NC_001806.1 + 10082 0.71 0.59149
Target:  5'- uGCGGACGGCCAGGCgagacGUccacguacucgcGGCGCAc -3'
miRNA:   3'- gUGCCUGUUGGUCCGac---CA------------CCGUGUc -5'
5754 3' -57.2 NC_001806.1 + 11981 0.72 0.531288
Target:  5'- --aGGACAAaCAGGCUGGcguuUGGCGCGu -3'
miRNA:   3'- gugCCUGUUgGUCCGACC----ACCGUGUc -5'
5754 3' -57.2 NC_001806.1 + 12392 1.09 0.002152
Target:  5'- cCACGGACAACCAGGCUGGUGGCACAGa -3'
miRNA:   3'- -GUGCCUGUUGGUCCGACCACCGUGUC- -5'
5754 3' -57.2 NC_001806.1 + 12793 0.66 0.838509
Target:  5'- cCGCGccGGCGAUCAGGCccauguuguucggGGUGGC-CGGg -3'
miRNA:   3'- -GUGC--CUGUUGGUCCGa------------CCACCGuGUC- -5'
5754 3' -57.2 NC_001806.1 + 14554 0.68 0.723275
Target:  5'- -cCGGAUAGCCAGGCc--UGGCuCAGa -3'
miRNA:   3'- guGCCUGUUGGUCCGaccACCGuGUC- -5'
5754 3' -57.2 NC_001806.1 + 18493 0.66 0.844994
Target:  5'- cCGCaGACAGCCAgGGCUGGgagcccuccuggggGGUcCAGu -3'
miRNA:   3'- -GUGcCUGUUGGU-CCGACCa-------------CCGuGUC- -5'
5754 3' -57.2 NC_001806.1 + 21195 0.69 0.713359
Target:  5'- aGCGGGgGGCCcucGGgUGG-GGCGCGGa -3'
miRNA:   3'- gUGCCUgUUGGu--CCgACCaCCGUGUC- -5'
5754 3' -57.2 NC_001806.1 + 22419 0.71 0.581344
Target:  5'- gGCGGcCGGCCGcuucGGCUGGggccUGGCGCAc -3'
miRNA:   3'- gUGCCuGUUGGU----CCGACC----ACCGUGUc -5'
5754 3' -57.2 NC_001806.1 + 24527 0.69 0.683234
Target:  5'- gCGCuGGACGGCCGGGC-GGcGGCcuCGGg -3'
miRNA:   3'- -GUG-CCUGUUGGUCCGaCCaCCGu-GUC- -5'
5754 3' -57.2 NC_001806.1 + 24682 0.71 0.551151
Target:  5'- gGCGGugcgcgcCGGCCcGGCccGGUGGCGCGGg -3'
miRNA:   3'- gUGCCu------GUUGGuCCGa-CCACCGUGUC- -5'
5754 3' -57.2 NC_001806.1 + 25634 0.68 0.771498
Target:  5'- gCugGGGCuggggaGGGCUGG-GGCugGGg -3'
miRNA:   3'- -GugCCUGuugg--UCCGACCaCCGugUC- -5'
5754 3' -57.2 NC_001806.1 + 25905 0.66 0.865199
Target:  5'- gGCGGGCGGcgguCCGGGCgGcGUGcGCGCGc -3'
miRNA:   3'- gUGCCUGUU----GGUCCGaC-CAC-CGUGUc -5'
5754 3' -57.2 NC_001806.1 + 26996 0.77 0.2919
Target:  5'- aGCGGGcCGACCGGGCUcgguuccggcgccgGGUGGCGgAGg -3'
miRNA:   3'- gUGCCU-GUUGGUCCGA--------------CCACCGUgUC- -5'
5754 3' -57.2 NC_001806.1 + 28305 0.66 0.864447
Target:  5'- aCACGGG-AGCCGGGCgccauguUGG-GGCGCc- -3'
miRNA:   3'- -GUGCCUgUUGGUCCG-------ACCaCCGUGuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.