miRNA display CGI


Results 1 - 20 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5754 5' -59.6 NC_001806.1 + 12426 1.11 0.001004
Target:  5'- gGCCCACGAGCACCAGGCCCUGCAACGg -3'
miRNA:   3'- -CGGGUGCUCGUGGUCCGGGACGUUGC- -5'
5754 5' -59.6 NC_001806.1 + 76577 0.81 0.114072
Target:  5'- cGCgCGCGAGCGCCGGGCCCaGCu-CGa -3'
miRNA:   3'- -CGgGUGCUCGUGGUCCGGGaCGuuGC- -5'
5754 5' -59.6 NC_001806.1 + 131974 0.79 0.158489
Target:  5'- gGCCCugGAGCGCCAgaccgggccgguGGCCCUGUucGCc -3'
miRNA:   3'- -CGGGugCUCGUGGU------------CCGGGACGu-UGc -5'
5754 5' -59.6 NC_001806.1 + 91455 0.77 0.197859
Target:  5'- uGCCgGCGAGCACCuGGCCaugCUGUGugGg -3'
miRNA:   3'- -CGGgUGCUCGUGGuCCGG---GACGUugC- -5'
5754 5' -59.6 NC_001806.1 + 21899 0.77 0.202725
Target:  5'- gGCCgCAuCGAGCgccGCCGGGCCCgcGCGGCGg -3'
miRNA:   3'- -CGG-GU-GCUCG---UGGUCCGGGa-CGUUGC- -5'
5754 5' -59.6 NC_001806.1 + 23455 0.77 0.223239
Target:  5'- aGCCCGCGGcGCcCCGGGCCgCcGCGGCGc -3'
miRNA:   3'- -CGGGUGCU-CGuGGUCCGG-GaCGUUGC- -5'
5754 5' -59.6 NC_001806.1 + 55478 0.76 0.228637
Target:  5'- aCCCGCGAGCcguACCGGGCCaaugggucGCGGCGg -3'
miRNA:   3'- cGGGUGCUCG---UGGUCCGGga------CGUUGC- -5'
5754 5' -59.6 NC_001806.1 + 133020 0.75 0.269554
Target:  5'- cGUCUugGAGCGCCuGGUCCcggacacgUGCAACGc -3'
miRNA:   3'- -CGGGugCUCGUGGuCCGGG--------ACGUUGC- -5'
5754 5' -59.6 NC_001806.1 + 119530 0.75 0.282282
Target:  5'- cGCCCugGuuCACCAGGCCgU-CAGCGg -3'
miRNA:   3'- -CGGGugCucGUGGUCCGGgAcGUUGC- -5'
5754 5' -59.6 NC_001806.1 + 149429 0.75 0.288822
Target:  5'- uCCCACG-GCGaccCCGGGCCCUGCGu-- -3'
miRNA:   3'- cGGGUGCuCGU---GGUCCGGGACGUugc -5'
5754 5' -59.6 NC_001806.1 + 37597 0.75 0.295481
Target:  5'- gGCCCGCcAGCACCGGGgCCCaggggcuauucGCGGCGg -3'
miRNA:   3'- -CGGGUGcUCGUGGUCC-GGGa----------CGUUGC- -5'
5754 5' -59.6 NC_001806.1 + 3809 0.75 0.295481
Target:  5'- -gCCGCGuGCGCCAGGCCCcaGCcgaAGCGg -3'
miRNA:   3'- cgGGUGCuCGUGGUCCGGGa-CG---UUGC- -5'
5754 5' -59.6 NC_001806.1 + 2719 0.74 0.302258
Target:  5'- cGCCCAgGGGguCgGGGCCCU-CGGCGg -3'
miRNA:   3'- -CGGGUgCUCguGgUCCGGGAcGUUGC- -5'
5754 5' -59.6 NC_001806.1 + 26988 0.74 0.302258
Target:  5'- gGCCCGCGAGCgggccgACCGGGCUCgguuccgGCGcCGg -3'
miRNA:   3'- -CGGGUGCUCG------UGGUCCGGGa------CGUuGC- -5'
5754 5' -59.6 NC_001806.1 + 150984 0.74 0.309155
Target:  5'- gGCCCACGAGCcgcggcgcGCCAGGCgg-GCGGCc -3'
miRNA:   3'- -CGGGUGCUCG--------UGGUCCGggaCGUUGc -5'
5754 5' -59.6 NC_001806.1 + 39071 0.74 0.323307
Target:  5'- aGCgCCACGAGCACCAccccGGCCaccacgGCGAUa -3'
miRNA:   3'- -CG-GGUGCUCGUGGU----CCGGga----CGUUGc -5'
5754 5' -59.6 NC_001806.1 + 100462 0.73 0.343169
Target:  5'- cCCCGCGcugacggacgauugGGCACCGGucaCCCUGCGGCGc -3'
miRNA:   3'- cGGGUGC--------------UCGUGGUCc--GGGACGUUGC- -5'
5754 5' -59.6 NC_001806.1 + 23714 0.73 0.346185
Target:  5'- cGCCgCGCGGuGCGCCGGGCCCgcccccgccgcccagGCcGCGu -3'
miRNA:   3'- -CGG-GUGCU-CGUGGUCCGGGa--------------CGuUGC- -5'
5754 5' -59.6 NC_001806.1 + 26792 0.73 0.353041
Target:  5'- -aCCGCgGAGCACCuGGCgcgccugcgCCUGCGACGc -3'
miRNA:   3'- cgGGUG-CUCGUGGuCCG---------GGACGUUGC- -5'
5754 5' -59.6 NC_001806.1 + 87652 0.73 0.37658
Target:  5'- cCCCGCGuuGCG-CGGGCCCgGCGGCGu -3'
miRNA:   3'- cGGGUGCu-CGUgGUCCGGGaCGUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.