miRNA display CGI


Results 1 - 20 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5754 5' -59.6 NC_001806.1 + 1549 0.7 0.489931
Target:  5'- gGCCCGCGc-CACCGGGCCggGcCGGCGc -3'
miRNA:   3'- -CGGGUGCucGUGGUCCGGgaC-GUUGC- -5'
5754 5' -59.6 NC_001806.1 + 1609 0.66 0.723895
Target:  5'- gGCCgcaGCGGcGCGcCCAGGCCCcagcgcgcgcagGCGGCGu -3'
miRNA:   3'- -CGGg--UGCU-CGU-GGUCCGGGa-----------CGUUGC- -5'
5754 5' -59.6 NC_001806.1 + 2123 0.7 0.499321
Target:  5'- gGCCCcgGCGAagGCCAGGUCCcGCGugGa -3'
miRNA:   3'- -CGGG--UGCUcgUGGUCCGGGaCGUugC- -5'
5754 5' -59.6 NC_001806.1 + 2315 0.68 0.626777
Target:  5'- gGCCC-CGccGCcgGCCAGGUCCUcgcccgGCAGCGg -3'
miRNA:   3'- -CGGGuGCu-CG--UGGUCCGGGA------CGUUGC- -5'
5754 5' -59.6 NC_001806.1 + 2668 0.68 0.606764
Target:  5'- cGgCCGCGGGCGCCgccguguggcuGGGCCCcgGgGGCu -3'
miRNA:   3'- -CgGGUGCUCGUGG-----------UCCGGGa-CgUUGc -5'
5754 5' -59.6 NC_001806.1 + 2719 0.74 0.302258
Target:  5'- cGCCCAgGGGguCgGGGCCCU-CGGCGg -3'
miRNA:   3'- -CGGGUgCUCguGgUCCGGGAcGUUGC- -5'
5754 5' -59.6 NC_001806.1 + 2758 0.67 0.696541
Target:  5'- cGgCCACgGGGCGCgggCGGGCCUgcgccGCGGCGg -3'
miRNA:   3'- -CgGGUG-CUCGUG---GUCCGGGa----CGUUGC- -5'
5754 5' -59.6 NC_001806.1 + 2799 0.67 0.675749
Target:  5'- gGCgCCGCGGGCugggcgggggcggGCuCGGGCCCcggggGCGugGa -3'
miRNA:   3'- -CG-GGUGCUCG-------------UG-GUCCGGGa----CGUugC- -5'
5754 5' -59.6 NC_001806.1 + 2935 0.66 0.763755
Target:  5'- cGCCUcCGGGCgGCCGGGCCggGCcggGACu -3'
miRNA:   3'- -CGGGuGCUCG-UGGUCCGGgaCG---UUGc -5'
5754 5' -59.6 NC_001806.1 + 3128 0.7 0.518334
Target:  5'- uCCCGCGgcAGCGCgGGGCCCagggccccgGCGACc -3'
miRNA:   3'- cGGGUGC--UCGUGgUCCGGGa--------CGUUGc -5'
5754 5' -59.6 NC_001806.1 + 3231 0.67 0.696541
Target:  5'- gGCgCAUGAGCACCAGcGCgUcGCGcACGa -3'
miRNA:   3'- -CGgGUGCUCGUGGUC-CGgGaCGU-UGC- -5'
5754 5' -59.6 NC_001806.1 + 3603 0.7 0.518334
Target:  5'- aCCCgGCGGGCACCGcgcgcucGCCCggUGCGGCGg -3'
miRNA:   3'- cGGG-UGCUCGUGGUc------CGGG--ACGUUGC- -5'
5754 5' -59.6 NC_001806.1 + 3809 0.75 0.295481
Target:  5'- -gCCGCGuGCGCCAGGCCCcaGCcgaAGCGg -3'
miRNA:   3'- cgGGUGCuCGUGGUCCGGGa-CG---UUGC- -5'
5754 5' -59.6 NC_001806.1 + 4119 0.72 0.401154
Target:  5'- cGCCU-CGGGCGCCccccagAGGCCCggGCGGCu -3'
miRNA:   3'- -CGGGuGCUCGUGG------UCCGGGa-CGUUGc -5'
5754 5' -59.6 NC_001806.1 + 4177 0.66 0.772979
Target:  5'- cGCCC-CGGGgGCgGgGGCCCgGCGcCGg -3'
miRNA:   3'- -CGGGuGCUCgUGgU-CCGGGaCGUuGC- -5'
5754 5' -59.6 NC_001806.1 + 4453 0.66 0.725829
Target:  5'- cGCCCGgGGGCuGCCGGcGCCgCgcuCGACGg -3'
miRNA:   3'- -CGGGUgCUCG-UGGUC-CGG-Gac-GUUGC- -5'
5754 5' -59.6 NC_001806.1 + 4739 0.72 0.401154
Target:  5'- gGCCC-CGGGC-CgGGGCCCggucgccgGCGGCGu -3'
miRNA:   3'- -CGGGuGCUCGuGgUCCGGGa-------CGUUGC- -5'
5754 5' -59.6 NC_001806.1 + 6073 0.72 0.418094
Target:  5'- gGCCC-CGGGgG-CGGGCCCggGCGGCGg -3'
miRNA:   3'- -CGGGuGCUCgUgGUCCGGGa-CGUUGC- -5'
5754 5' -59.6 NC_001806.1 + 7279 0.68 0.626777
Target:  5'- cCCCGgGAGCcCCGGGUUCcGCGACc -3'
miRNA:   3'- cGGGUgCUCGuGGUCCGGGaCGUUGc -5'
5754 5' -59.6 NC_001806.1 + 7713 0.67 0.706367
Target:  5'- uGCCCGCGGacCACCGGGCCUUcUuuCGa -3'
miRNA:   3'- -CGGGUGCUc-GUGGUCCGGGAcGuuGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.