miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5756 3' -52.4 NC_001806.1 + 11977 1.12 0.004246
Target:  5'- cCCCAGGACAAACAGGCUGGCGUUUGGc -3'
miRNA:   3'- -GGGUCCUGUUUGUCCGACCGCAAACC- -5'
5756 3' -52.4 NC_001806.1 + 132921 0.8 0.390202
Target:  5'- cCUCGGGGgGAGCGGGCUGGCGg---- -3'
miRNA:   3'- -GGGUCCUgUUUGUCCGACCGCaaacc -5'
5756 3' -52.4 NC_001806.1 + 2793 0.8 0.416358
Target:  5'- gCCCGGGGCGccGCGGGCUgGGCGg--GGg -3'
miRNA:   3'- -GGGUCCUGUu-UGUCCGA-CCGCaaaCC- -5'
5756 3' -52.4 NC_001806.1 + 67237 0.78 0.491005
Target:  5'- gCCAGGugAGGCAGGUcGGCGg--GGu -3'
miRNA:   3'- gGGUCCugUUUGUCCGaCCGCaaaCC- -5'
5756 3' -52.4 NC_001806.1 + 1630 0.75 0.633492
Target:  5'- cCCCAGcGCGcGCAGGC-GGCGUgcgagUGGg -3'
miRNA:   3'- -GGGUCcUGUuUGUCCGaCCGCAa----ACC- -5'
5756 3' -52.4 NC_001806.1 + 36686 0.75 0.675045
Target:  5'- gUCCGGGGCccguaaGAACAGGUUGGUGaggGGg -3'
miRNA:   3'- -GGGUCCUG------UUUGUCCGACCGCaaaCC- -5'
5756 3' -52.4 NC_001806.1 + 12391 0.74 0.705859
Target:  5'- gCCAcGGACAAcCAGGCUGGUGg---- -3'
miRNA:   3'- gGGU-CCUGUUuGUCCGACCGCaaacc -5'
5756 3' -52.4 NC_001806.1 + 75826 0.73 0.745995
Target:  5'- cCCCGGGACuuccgaAAGCGGGCgaacaGGCGc-UGGg -3'
miRNA:   3'- -GGGUCCUG------UUUGUCCGa----CCGCaaACC- -5'
5756 3' -52.4 NC_001806.1 + 123198 0.73 0.745995
Target:  5'- cCCCGGGuCGcccGCAGGgUGGCGgaaUGGa -3'
miRNA:   3'- -GGGUCCuGUu--UGUCCgACCGCaa-ACC- -5'
5756 3' -52.4 NC_001806.1 + 33993 0.73 0.765482
Target:  5'- gCCGGGGCAG--GGGCgggGGCGUgggcgGGg -3'
miRNA:   3'- gGGUCCUGUUugUCCGa--CCGCAaa---CC- -5'
5756 3' -52.4 NC_001806.1 + 109463 0.73 0.784479
Target:  5'- uUguGGGCGucAAguGGCUGGCGUggGGc -3'
miRNA:   3'- gGguCCUGU--UUguCCGACCGCAaaCC- -5'
5756 3' -52.4 NC_001806.1 + 113320 0.73 0.784479
Target:  5'- gCCCGGGGgAGAucCAGGCcaccUGGCGcgUGGu -3'
miRNA:   3'- -GGGUCCUgUUU--GUCCG----ACCGCaaACC- -5'
5756 3' -52.4 NC_001806.1 + 85983 0.72 0.802002
Target:  5'- uCCCGGGGgGucGGCAGGCgacGGCGUcucccgggggcgcUUGGc -3'
miRNA:   3'- -GGGUCCUgU--UUGUCCGa--CCGCA-------------AACC- -5'
5756 3' -52.4 NC_001806.1 + 150086 0.71 0.837779
Target:  5'- uCCCAGGGgAGGCAGGCccaccgcggGGCGg---- -3'
miRNA:   3'- -GGGUCCUgUUUGUCCGa--------CCGCaaacc -5'
5756 3' -52.4 NC_001806.1 + 12944 0.71 0.837779
Target:  5'- uUCCGGGGCGAGuuCuGGCUGcGUGgcgUUGGg -3'
miRNA:   3'- -GGGUCCUGUUU--GuCCGAC-CGCa--AACC- -5'
5756 3' -52.4 NC_001806.1 + 46816 0.71 0.846033
Target:  5'- aCCGGGACuGGguGGCggggGGUGggUUGGa -3'
miRNA:   3'- gGGUCCUGuUUguCCGa---CCGCa-AACC- -5'
5756 3' -52.4 NC_001806.1 + 151286 0.71 0.854086
Target:  5'- gCCGGGGCcGGgGGGC-GGCGgcggUGGg -3'
miRNA:   3'- gGGUCCUGuUUgUCCGaCCGCaa--ACC- -5'
5756 3' -52.4 NC_001806.1 + 34430 0.71 0.854086
Target:  5'- gCCGGGcCGggUGGGC-GGgGUUUGGa -3'
miRNA:   3'- gGGUCCuGUuuGUCCGaCCgCAAACC- -5'
5756 3' -52.4 NC_001806.1 + 38061 0.71 0.861931
Target:  5'- gCCCAcGGcguccgccGCGGGCAGGCUGGgcUUUGGu -3'
miRNA:   3'- -GGGU-CC--------UGUUUGUCCGACCgcAAACC- -5'
5756 3' -52.4 NC_001806.1 + 6075 0.71 0.861931
Target:  5'- cCCCGGGG---GCGGGCccgGGCGgcgGGg -3'
miRNA:   3'- -GGGUCCUguuUGUCCGa--CCGCaaaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.