miRNA display CGI


Results 1 - 20 of 74 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5756 3' -52.4 NC_001806.1 + 1630 0.75 0.633492
Target:  5'- cCCCAGcGCGcGCAGGC-GGCGUgcgagUGGg -3'
miRNA:   3'- -GGGUCcUGUuUGUCCGaCCGCAa----ACC- -5'
5756 3' -52.4 NC_001806.1 + 2657 0.66 0.98397
Target:  5'- cUCCAGGGCGGcggccGCGGGCgccgccGUGUggcUGGg -3'
miRNA:   3'- -GGGUCCUGUU-----UGUCCGac----CGCAa--ACC- -5'
5756 3' -52.4 NC_001806.1 + 2793 0.8 0.416358
Target:  5'- gCCCGGGGCGccGCGGGCUgGGCGg--GGg -3'
miRNA:   3'- -GGGUCCUGUu-UGUCCGA-CCGCaaaCC- -5'
5756 3' -52.4 NC_001806.1 + 3539 0.66 0.98201
Target:  5'- cCCgCGGGGgAGGCGGGCgcGGCGg---- -3'
miRNA:   3'- -GG-GUCCUgUUUGUCCGa-CCGCaaacc -5'
5756 3' -52.4 NC_001806.1 + 4825 0.69 0.932502
Target:  5'- gUCCGGGGCGGcgaggccGCGGGgucgGGCGUcgGGa -3'
miRNA:   3'- -GGGUCCUGUU-------UGUCCga--CCGCAaaCC- -5'
5756 3' -52.4 NC_001806.1 + 5658 0.67 0.975049
Target:  5'- gCCAuGGGCG---GGGCgcgagGGCGggUGGg -3'
miRNA:   3'- gGGU-CCUGUuugUCCGa----CCGCaaACC- -5'
5756 3' -52.4 NC_001806.1 + 5875 0.67 0.962959
Target:  5'- gCCGGGACcAACGGGaCggcgGGCGgcccaaGGg -3'
miRNA:   3'- gGGUCCUGuUUGUCC-Ga---CCGCaaa---CC- -5'
5756 3' -52.4 NC_001806.1 + 6075 0.71 0.861931
Target:  5'- cCCCGGGG---GCGGGCccgGGCGgcgGGg -3'
miRNA:   3'- -GGGUCCUguuUGUCCGa--CCGCaaaCC- -5'
5756 3' -52.4 NC_001806.1 + 9122 0.67 0.975049
Target:  5'- gCCAGGcgACAAACAGGgagggGGCGUcgacagccUGGa -3'
miRNA:   3'- gGGUCC--UGUUUGUCCga---CCGCAa-------ACC- -5'
5756 3' -52.4 NC_001806.1 + 11977 1.12 0.004246
Target:  5'- cCCCAGGACAAACAGGCUGGCGUUUGGc -3'
miRNA:   3'- -GGGUCCUGUUUGUCCGACCGCAAACC- -5'
5756 3' -52.4 NC_001806.1 + 12144 0.66 0.98397
Target:  5'- -aCAGGGCGAAUgccacGGCggGGCGacgUGGg -3'
miRNA:   3'- ggGUCCUGUUUGu----CCGa-CCGCaa-ACC- -5'
5756 3' -52.4 NC_001806.1 + 12391 0.74 0.705859
Target:  5'- gCCAcGGACAAcCAGGCUGGUGg---- -3'
miRNA:   3'- gGGU-CCUGUUuGUCCGACCGCaaacc -5'
5756 3' -52.4 NC_001806.1 + 12944 0.71 0.837779
Target:  5'- uUCCGGGGCGAGuuCuGGCUGcGUGgcgUUGGg -3'
miRNA:   3'- -GGGUCCUGUUU--GuCCGAC-CGCa--AACC- -5'
5756 3' -52.4 NC_001806.1 + 13136 0.68 0.942775
Target:  5'- gCCUgggGGGAgAGGCAGGCUGaCGgg-GGg -3'
miRNA:   3'- -GGG---UCCUgUUUGUCCGACcGCaaaCC- -5'
5756 3' -52.4 NC_001806.1 + 14374 0.66 0.9874
Target:  5'- cCCCAGG------GGGCUGGgGUgagGGg -3'
miRNA:   3'- -GGGUCCuguuugUCCGACCgCAaa-CC- -5'
5756 3' -52.4 NC_001806.1 + 15962 0.69 0.938018
Target:  5'- gCCAGGACucGgGGGCguUGGUGUcgaUGGu -3'
miRNA:   3'- gGGUCCUGuuUgUCCG--ACCGCAa--ACC- -5'
5756 3' -52.4 NC_001806.1 + 17925 0.69 0.92227
Target:  5'- gCCCGGGACAAACGgacGGgaGcGCGaUUGu -3'
miRNA:   3'- -GGGUCCUGUUUGU---CCgaC-CGCaAACc -5'
5756 3' -52.4 NC_001806.1 + 18442 0.66 0.979876
Target:  5'- cCCCAGaauCGGAUGGGCccgGGCGUUccacggagcUGGu -3'
miRNA:   3'- -GGGUCcu-GUUUGUCCGa--CCGCAA---------ACC- -5'
5756 3' -52.4 NC_001806.1 + 18936 0.66 0.985764
Target:  5'- aUCAGGugGcGCAGGCgguUGGCacugcgUGGg -3'
miRNA:   3'- gGGUCCugUuUGUCCG---ACCGcaa---ACC- -5'
5756 3' -52.4 NC_001806.1 + 25009 0.66 0.985764
Target:  5'- gCCGGGACG---GGGCggGGCGcUUGu -3'
miRNA:   3'- gGGUCCUGUuugUCCGa-CCGCaAACc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.