miRNA display CGI


Results 1 - 20 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5756 5' -51.9 NC_001806.1 + 12013 1.13 0.004288
Target:  5'- gACCCAUACGCGUAACACGUACACCCCg -3'
miRNA:   3'- -UGGGUAUGCGCAUUGUGCAUGUGGGG- -5'
5756 5' -51.9 NC_001806.1 + 92091 0.85 0.236292
Target:  5'- gACCCGUACGCGUGcggGC-CGUGC-CCCCu -3'
miRNA:   3'- -UGGGUAUGCGCAU---UGuGCAUGuGGGG- -5'
5756 5' -51.9 NC_001806.1 + 82975 0.81 0.369941
Target:  5'- uCCCGUAaaguuCGC-UGGCGCGUGCGCCCCu -3'
miRNA:   3'- uGGGUAU-----GCGcAUUGUGCAUGUGGGG- -5'
5756 5' -51.9 NC_001806.1 + 42513 0.79 0.496908
Target:  5'- cGCCCugcgGUACGCGgcaAGCACGcGCACCUCg -3'
miRNA:   3'- -UGGG----UAUGCGCa--UUGUGCaUGUGGGG- -5'
5756 5' -51.9 NC_001806.1 + 50798 0.78 0.506749
Target:  5'- cCCCcgAgGUG-GGCACGUACACCCCc -3'
miRNA:   3'- uGGGuaUgCGCaUUGUGCAUGUGGGG- -5'
5756 5' -51.9 NC_001806.1 + 119018 0.78 0.506749
Target:  5'- gACCCGUACGcCGUGGCGgCGcUGCGCCUUg -3'
miRNA:   3'- -UGGGUAUGC-GCAUUGU-GC-AUGUGGGG- -5'
5756 5' -51.9 NC_001806.1 + 125162 0.77 0.577625
Target:  5'- aACCCGUGCGCGcGGCACGcGCugUCg -3'
miRNA:   3'- -UGGGUAUGCGCaUUGUGCaUGugGGg -5'
5756 5' -51.9 NC_001806.1 + 57211 0.76 0.619148
Target:  5'- cCCCAgACGCGgcauuCGCGUACGgCCCg -3'
miRNA:   3'- uGGGUaUGCGCauu--GUGCAUGUgGGG- -5'
5756 5' -51.9 NC_001806.1 + 47458 0.76 0.658751
Target:  5'- uGCCCAgcgAUGUGguggaaugggggGACGCGUACGuCCCCg -3'
miRNA:   3'- -UGGGUa--UGCGCa-----------UUGUGCAUGU-GGGG- -5'
5756 5' -51.9 NC_001806.1 + 22230 0.76 0.66083
Target:  5'- cGCCCugaucACGCGgcuGC-UGUACACCCCg -3'
miRNA:   3'- -UGGGua---UGCGCau-UGuGCAUGUGGGG- -5'
5756 5' -51.9 NC_001806.1 + 21538 0.75 0.681562
Target:  5'- gGCCCcgcUACGCG--GCGCGUAUccggACCCCa -3'
miRNA:   3'- -UGGGu--AUGCGCauUGUGCAUG----UGGGG- -5'
5756 5' -51.9 NC_001806.1 + 128651 0.75 0.702125
Target:  5'- uGCCCAcaaggcucUGCGUGUccaaccugaggGGCACGgcUACACCCCc -3'
miRNA:   3'- -UGGGU--------AUGCGCA-----------UUGUGC--AUGUGGGG- -5'
5756 5' -51.9 NC_001806.1 + 74710 0.75 0.71232
Target:  5'- uGCCCGUuuGCGggAGCGCGcGCGCUCCc -3'
miRNA:   3'- -UGGGUAugCGCa-UUGUGCaUGUGGGG- -5'
5756 5' -51.9 NC_001806.1 + 145720 0.75 0.71232
Target:  5'- gGCCCAccuggccGCGCGgguGCGCGUGCcuuugcacaccaACCCCa -3'
miRNA:   3'- -UGGGUa------UGCGCau-UGUGCAUG------------UGGGG- -5'
5756 5' -51.9 NC_001806.1 + 148148 0.75 0.71232
Target:  5'- cGCCCGUcACGgGggGCGCGgcgGCGCCUCu -3'
miRNA:   3'- -UGGGUA-UGCgCauUGUGCa--UGUGGGG- -5'
5756 5' -51.9 NC_001806.1 + 136034 0.74 0.762034
Target:  5'- gACCC--GCGCGgcAC-CGgcCACCCCg -3'
miRNA:   3'- -UGGGuaUGCGCauUGuGCauGUGGGG- -5'
5756 5' -51.9 NC_001806.1 + 67118 0.73 0.781151
Target:  5'- gGCCCGcGCGCGUGcacccGCucuCGgcuCGCCCCg -3'
miRNA:   3'- -UGGGUaUGCGCAU-----UGu--GCau-GUGGGG- -5'
5756 5' -51.9 NC_001806.1 + 89052 0.73 0.789577
Target:  5'- cACCUuggggGCGCGcuugaggUGACcguCGUGCACCCCg -3'
miRNA:   3'- -UGGGua---UGCGC-------AUUGu--GCAUGUGGGG- -5'
5756 5' -51.9 NC_001806.1 + 94803 0.73 0.790506
Target:  5'- gGCCCGgACGCGgggGGCgACGgGCAgCCCCa -3'
miRNA:   3'- -UGGGUaUGCGCa--UUG-UGCaUGU-GGGG- -5'
5756 5' -51.9 NC_001806.1 + 35868 0.73 0.797884
Target:  5'- gGCCCAacGCGCGgcGCGCGgcucgucugaucAUGCCCCa -3'
miRNA:   3'- -UGGGUa-UGCGCauUGUGCa-----------UGUGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.