miRNA display CGI


Results 1 - 20 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5756 5' -51.9 NC_001806.1 + 320 0.66 0.985239
Target:  5'- cGCCCGccGCGCGcgcGCACGc-CGCCCg -3'
miRNA:   3'- -UGGGUa-UGCGCau-UGUGCauGUGGGg -5'
5756 5' -51.9 NC_001806.1 + 354 0.66 0.985061
Target:  5'- cGCCCGccuuuuuUGCGC---GCGCGcGCGCCCg -3'
miRNA:   3'- -UGGGU-------AUGCGcauUGUGCaUGUGGGg -5'
5756 5' -51.9 NC_001806.1 + 1749 0.66 0.991102
Target:  5'- gGCCCGgcgguacucGCGCGggGACAUGgGCACCg- -3'
miRNA:   3'- -UGGGUa--------UGCGCa-UUGUGCaUGUGGgg -5'
5756 5' -51.9 NC_001806.1 + 1870 0.67 0.979184
Target:  5'- cGCgCGUGCGCGgccuccacgcGCGCGaAgACCCCc -3'
miRNA:   3'- -UGgGUAUGCGCau--------UGUGCaUgUGGGG- -5'
5756 5' -51.9 NC_001806.1 + 4052 0.66 0.991102
Target:  5'- cGCCCAgcucggGCGCcc-ACACGgccgccgggGCGCCCg -3'
miRNA:   3'- -UGGGUa-----UGCGcauUGUGCa--------UGUGGGg -5'
5756 5' -51.9 NC_001806.1 + 4154 0.67 0.981377
Target:  5'- cGCCCAggcCGcCGUAcaGCACc--CGCCCCg -3'
miRNA:   3'- -UGGGUau-GC-GCAU--UGUGcauGUGGGG- -5'
5756 5' -51.9 NC_001806.1 + 4225 0.67 0.979184
Target:  5'- uACCCGU-CGCGaUAGCGCGcguagaagGCGCCg- -3'
miRNA:   3'- -UGGGUAuGCGC-AUUGUGCa-------UGUGGgg -5'
5756 5' -51.9 NC_001806.1 + 5658 0.69 0.94631
Target:  5'- -gCCAUGgGCGggGCGCGagggcggguggguccGCGCCCCg -3'
miRNA:   3'- ugGGUAUgCGCauUGUGCa--------------UGUGGGG- -5'
5756 5' -51.9 NC_001806.1 + 5927 0.7 0.908496
Target:  5'- cCCCAUugGcCGgcGgGCGggacCGCCCCa -3'
miRNA:   3'- uGGGUAugC-GCauUgUGCau--GUGGGG- -5'
5756 5' -51.9 NC_001806.1 + 6715 0.66 0.989714
Target:  5'- gACaCCAUGCGgGUugggcccAGgACGUACGCCg- -3'
miRNA:   3'- -UG-GGUAUGCgCA-------UUgUGCAUGUGGgg -5'
5756 5' -51.9 NC_001806.1 + 7817 0.66 0.989847
Target:  5'- gGCCgccACGCGcGGCugGUccACACCCa -3'
miRNA:   3'- -UGGguaUGCGCaUUGugCA--UGUGGGg -5'
5756 5' -51.9 NC_001806.1 + 8794 0.68 0.958211
Target:  5'- gGCCCAUGCGUacgaggAAguCGUugGCCgCCu -3'
miRNA:   3'- -UGGGUAUGCGca----UUguGCAugUGG-GG- -5'
5756 5' -51.9 NC_001806.1 + 12013 1.13 0.004288
Target:  5'- gACCCAUACGCGUAACACGUACACCCCg -3'
miRNA:   3'- -UGGGUAUGCGCAUUGUGCAUGUGGGG- -5'
5756 5' -51.9 NC_001806.1 + 12441 0.68 0.958211
Target:  5'- gGCCCugcaACGgGcGGCACG-GCAUCCCg -3'
miRNA:   3'- -UGGGua--UGCgCaUUGUGCaUGUGGGG- -5'
5756 5' -51.9 NC_001806.1 + 17825 0.67 0.983393
Target:  5'- uGCCCGa--GUGgaccGugGCGUGgACCCCg -3'
miRNA:   3'- -UGGGUaugCGCa---UugUGCAUgUGGGG- -5'
5756 5' -51.9 NC_001806.1 + 18819 0.69 0.941267
Target:  5'- uCCCGUAUgGUGUugcGCAgGUGCauGCCCCa -3'
miRNA:   3'- uGGGUAUG-CGCAu--UGUgCAUG--UGGGG- -5'
5756 5' -51.9 NC_001806.1 + 20558 0.7 0.92098
Target:  5'- -gCCAUGCGgGgcggGGCGCGgacccacccgcccucGCGCCCCg -3'
miRNA:   3'- ugGGUAUGCgCa---UUGUGCa--------------UGUGGGG- -5'
5756 5' -51.9 NC_001806.1 + 21538 0.75 0.681562
Target:  5'- gGCCCcgcUACGCG--GCGCGUAUccggACCCCa -3'
miRNA:   3'- -UGGGu--AUGCGCauUGUGCAUG----UGGGG- -5'
5756 5' -51.9 NC_001806.1 + 22230 0.76 0.66083
Target:  5'- cGCCCugaucACGCGgcuGC-UGUACACCCCg -3'
miRNA:   3'- -UGGGua---UGCGCau-UGuGCAUGUGGGG- -5'
5756 5' -51.9 NC_001806.1 + 22375 0.7 0.914576
Target:  5'- -aCCGgcaGCGUGGCGCGgGCcguGCCCCa -3'
miRNA:   3'- ugGGUaugCGCAUUGUGCaUG---UGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.