miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5758 5' -54.9 NC_001806.1 + 100803 0.66 0.950208
Target:  5'- --cGCGAGACgCCgGCGACaGGUGgcgaAAGg -3'
miRNA:   3'- aguCGCUCUG-GG-UGCUGcCCACa---UUC- -5'
5758 5' -54.9 NC_001806.1 + 33812 0.66 0.950208
Target:  5'- cCGGCGgguGGACUCGCGGgGGGccgGAGg -3'
miRNA:   3'- aGUCGC---UCUGGGUGCUgCCCacaUUC- -5'
5758 5' -54.9 NC_001806.1 + 66818 0.66 0.950208
Target:  5'- -gAGCGGGGCCgGCc-CGGGUGg--- -3'
miRNA:   3'- agUCGCUCUGGgUGcuGCCCACauuc -5'
5758 5' -54.9 NC_001806.1 + 151563 0.66 0.945933
Target:  5'- gCGGCGGGGgCCGCGAUGGcGgcggcGgcGGg -3'
miRNA:   3'- aGUCGCUCUgGGUGCUGCC-Ca----CauUC- -5'
5758 5' -54.9 NC_001806.1 + 12798 0.66 0.933714
Target:  5'- cCGGCGAucaGGCCCAUGuuguuCGGGguggccgggggaugGUAAGg -3'
miRNA:   3'- aGUCGCU---CUGGGUGCu----GCCCa-------------CAUUC- -5'
5758 5' -54.9 NC_001806.1 + 150817 0.66 0.931691
Target:  5'- cUCcGCGgaAGACCCAgGccgccuCGGGUGUAAc -3'
miRNA:   3'- -AGuCGC--UCUGGGUgCu-----GCCCACAUUc -5'
5758 5' -54.9 NC_001806.1 + 54491 0.67 0.9153
Target:  5'- cUCGGUGGGGuCCCugGGUGGGggcugGUGAc -3'
miRNA:   3'- -AGUCGCUCU-GGGugCUGCCCa----CAUUc -5'
5758 5' -54.9 NC_001806.1 + 23924 0.67 0.9153
Target:  5'- -gGGCGAGgaccugGCCgGCGGCGGGgccUGGGg -3'
miRNA:   3'- agUCGCUC------UGGgUGCUGCCCac-AUUC- -5'
5758 5' -54.9 NC_001806.1 + 2460 0.67 0.9153
Target:  5'- cCGGCG--GCCC-CGugGGG-GUGGGg -3'
miRNA:   3'- aGUCGCucUGGGuGCugCCCaCAUUC- -5'
5758 5' -54.9 NC_001806.1 + 4832 0.67 0.9153
Target:  5'- gCGGCGAGGCCgCGgGGuCGGGcGUcGGg -3'
miRNA:   3'- aGUCGCUCUGG-GUgCU-GCCCaCAuUC- -5'
5758 5' -54.9 NC_001806.1 + 118732 0.67 0.909359
Target:  5'- cCAGCGAGugCCugGcggccGCGGGa----- -3'
miRNA:   3'- aGUCGCUCugGGugC-----UGCCCacauuc -5'
5758 5' -54.9 NC_001806.1 + 5663 0.67 0.903182
Target:  5'- -gGGCGGGGCgCgAgGGCGGGUGg--- -3'
miRNA:   3'- agUCGCUCUG-GgUgCUGCCCACauuc -5'
5758 5' -54.9 NC_001806.1 + 151738 0.68 0.883259
Target:  5'- --cGCGcGACCCcCGGgGGGUGUGu- -3'
miRNA:   3'- aguCGCuCUGGGuGCUgCCCACAUuc -5'
5758 5' -54.9 NC_001806.1 + 28 0.68 0.883259
Target:  5'- --cGCGcGACCCcCGGgGGGUGUGu- -3'
miRNA:   3'- aguCGCuCUGGGuGCUgCCCACAUuc -5'
5758 5' -54.9 NC_001806.1 + 147781 0.68 0.883259
Target:  5'- gCGG-GGGGCCCGgGGCGGGgGgcGGa -3'
miRNA:   3'- aGUCgCUCUGGGUgCUGCCCaCauUC- -5'
5758 5' -54.9 NC_001806.1 + 95329 0.68 0.876166
Target:  5'- gCGGCGcGGGCCCcgacgACGACGGGgaccGUGu- -3'
miRNA:   3'- aGUCGC-UCUGGG-----UGCUGCCCa---CAUuc -5'
5758 5' -54.9 NC_001806.1 + 72532 0.69 0.8536
Target:  5'- gUCGGCGuGGGCCCcCGGgaGGGgGUAGGg -3'
miRNA:   3'- -AGUCGC-UCUGGGuGCUg-CCCaCAUUC- -5'
5758 5' -54.9 NC_001806.1 + 25922 0.69 0.845668
Target:  5'- gCGGCGuGcgcGCgCGCGGCGGGcGUGGGg -3'
miRNA:   3'- aGUCGCuC---UGgGUGCUGCCCaCAUUC- -5'
5758 5' -54.9 NC_001806.1 + 6081 0.69 0.845668
Target:  5'- -gGGCG-GGCCCggGCGGCGGGgGgcGGg -3'
miRNA:   3'- agUCGCuCUGGG--UGCUGCCCaCauUC- -5'
5758 5' -54.9 NC_001806.1 + 151428 0.69 0.837542
Target:  5'- -aGGCGGgGGCCCAcCGGCGGGgGgcGGc -3'
miRNA:   3'- agUCGCU-CUGGGU-GCUGCCCaCauUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.