miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5758 5' -54.9 NC_001806.1 + 151738 0.68 0.883259
Target:  5'- --cGCGcGACCCcCGGgGGGUGUGu- -3'
miRNA:   3'- aguCGCuCUGGGuGCUgCCCACAUuc -5'
5758 5' -54.9 NC_001806.1 + 151563 0.66 0.945933
Target:  5'- gCGGCGGGGgCCGCGAUGGcGgcggcGgcGGg -3'
miRNA:   3'- aGUCGCUCUgGGUGCUGCC-Ca----CauUC- -5'
5758 5' -54.9 NC_001806.1 + 151428 0.69 0.837542
Target:  5'- -aGGCGGgGGCCCAcCGGCGGGgGgcGGc -3'
miRNA:   3'- agUCGCU-CUGGGU-GCUGCCCaCauUC- -5'
5758 5' -54.9 NC_001806.1 + 151248 0.71 0.747323
Target:  5'- gUCAGCcccgccccccGGGCCCACGcCGGGcgGUGGGg -3'
miRNA:   3'- -AGUCGc---------UCUGGGUGCuGCCCa-CAUUC- -5'
5758 5' -54.9 NC_001806.1 + 150817 0.66 0.931691
Target:  5'- cUCcGCGgaAGACCCAgGccgccuCGGGUGUAAc -3'
miRNA:   3'- -AGuCGC--UCUGGGUgCu-----GCCCACAUUc -5'
5758 5' -54.9 NC_001806.1 + 147781 0.68 0.883259
Target:  5'- gCGG-GGGGCCCGgGGCGGGgGgcGGa -3'
miRNA:   3'- aGUCgCUCUGGGUgCUGCCCaCauUC- -5'
5758 5' -54.9 NC_001806.1 + 132023 0.71 0.737595
Target:  5'- aUCGGCucGGACCCACGcACGGGacugGUGGu -3'
miRNA:   3'- -AGUCGc-UCUGGGUGC-UGCCCa---CAUUc -5'
5758 5' -54.9 NC_001806.1 + 118732 0.67 0.909359
Target:  5'- cCAGCGAGugCCugGcggccGCGGGa----- -3'
miRNA:   3'- aGUCGCUCugGGugC-----UGCCCacauuc -5'
5758 5' -54.9 NC_001806.1 + 117054 0.78 0.379669
Target:  5'- cCGGCuAGACCCACGGgGGG-GUGGGg -3'
miRNA:   3'- aGUCGcUCUGGGUGCUgCCCaCAUUC- -5'
5758 5' -54.9 NC_001806.1 + 113150 0.7 0.775862
Target:  5'- gCAGCGccuGGCCCACGgGCGGGUc---- -3'
miRNA:   3'- aGUCGCu--CUGGGUGC-UGCCCAcauuc -5'
5758 5' -54.9 NC_001806.1 + 112053 0.74 0.545347
Target:  5'- -gGGgGAGGCCCugGACGGGacggGUAu- -3'
miRNA:   3'- agUCgCUCUGGGugCUGCCCa---CAUuc -5'
5758 5' -54.9 NC_001806.1 + 109316 0.74 0.565414
Target:  5'- cCAGCGGGGCCCACG-CGGucaauGUGUuuGa -3'
miRNA:   3'- aGUCGCUCUGGGUGCuGCC-----CACAuuC- -5'
5758 5' -54.9 NC_001806.1 + 100803 0.66 0.950208
Target:  5'- --cGCGAGACgCCgGCGACaGGUGgcgaAAGg -3'
miRNA:   3'- aguCGCUCUG-GG-UGCUGcCCACa---UUC- -5'
5758 5' -54.9 NC_001806.1 + 95329 0.68 0.876166
Target:  5'- gCGGCGcGGGCCCcgacgACGACGGGgaccGUGu- -3'
miRNA:   3'- aGUCGC-UCUGGG-----UGCUGCCCa---CAUuc -5'
5758 5' -54.9 NC_001806.1 + 84883 0.75 0.525514
Target:  5'- cCGGCGGGACUCugGGCGuGGUGc--- -3'
miRNA:   3'- aGUCGCUCUGGGugCUGC-CCACauuc -5'
5758 5' -54.9 NC_001806.1 + 72532 0.69 0.8536
Target:  5'- gUCGGCGuGGGCCCcCGGgaGGGgGUAGGg -3'
miRNA:   3'- -AGUCGC-UCUGGGuGCUg-CCCaCAUUC- -5'
5758 5' -54.9 NC_001806.1 + 72079 0.73 0.647005
Target:  5'- uUCGGgGAG-CCCGCGGCGGGccUGcugGAGa -3'
miRNA:   3'- -AGUCgCUCuGGGUGCUGCCC--ACa--UUC- -5'
5758 5' -54.9 NC_001806.1 + 69685 0.72 0.67762
Target:  5'- -uGGCGAG-CCUGCGGCGGGcgcucGUGGGg -3'
miRNA:   3'- agUCGCUCuGGGUGCUGCCCa----CAUUC- -5'
5758 5' -54.9 NC_001806.1 + 66818 0.66 0.950208
Target:  5'- -gAGCGGGGCCgGCc-CGGGUGg--- -3'
miRNA:   3'- agUCGCUCUGGgUGcuGCCCACauuc -5'
5758 5' -54.9 NC_001806.1 + 66530 0.7 0.766466
Target:  5'- gCGGCcAGGCCCGCGAgGGGg--AAGu -3'
miRNA:   3'- aGUCGcUCUGGGUGCUgCCCacaUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.